Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00952 ATGGAGTTCGGCAGTGGAGGCAGTGGGTCCCCGGAGGACCACGACGGTTCTGATTCCCAGAGGAGGAAGCGCTACCATCGTCACACTGCTCACCAGATTCAGAGGCTCGAATCAATGTTCAAAGAATGCCCCCATCCAGATGAGAAGCAGAGATTGCAGTTAAGCAGGGAGTTAGGCTTGGCCCCTAGACAGATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAAAGAGCTGATAACTGTGCACTTCGGGCAGAGAACGACAAGATACGATGTGAGAACATAGCAATCAGAGAAGCTTTGAAAAATGTCATCTGCCCATCTTGTGGTGGCCCTCATCTCAATGAGGATTCCTATTTCGATGAGCAAAAGTTGCGATTAGAGAATGCCCAATTGAAAGAAGAGCTTGATAGAGTGTCTAGCATTGCAGCTAAGTACATTGGAAGACCAATTTCTCAGCTTCCACCAGTTCAGCCTATTCATATATCATCTCTTGACTTGTCAATGGGAAGTTTTGGAAGCCATATCTTGGGTGGCCCTTCCCTTGATCTTGATCTTCTCCCAGGGAGTTCTTCGTCAATCCCAAATTTGCCTTATCAGCCTGCTTGTCTTTCAGACATGGACAAATCCCTCATGACAGACATTGCTGCCAATGCCTTGGAAGAACTGCTCAGGCTTCTGCAGACTAATGACCCATTTTGGATGAAGTCAAAAACAGATGGGAGAGAAATACTTAATCTTGAAACCTATGAAAGAATGTTTCCAAGGGCAAATAGCCAGTTGAGGAACCCTAATATCCGGGTTGAAGCATCCAGAGAATCAGGAGTTGCAATTATGAATGCTTTAAATCTGGTTGATATGTTCATGGACCCAAACAAGTGGATGGAGCTGTTTCCCACAATTATCTCAGTGGCAAGAACTATTGAAGTAATATCTTCTGGGATGTTGGGTGGCCACAGTGGTTCTTTGCAATTGATGTATGGAGAGCTGCAAGTGCTTTCACCACTTGTTCCAACTAGGGAGTTCTACTTCCTCCGCTACTGTCAGCAAATTGAGCAAGGTTTATGGGCAATAGTAGATGTTTCTTATGATTTTCCCCAAGATAACCATTTTTCTCCTCAATTCCAATGCCACCGGCGTCCATCCGGATGCTTGATCCAAGACATGCCTAATGGATATTCCAAGGTCATATGGGTTGAGCAcatagaaattgaagacaaaactCCAATTCATCGGCTTTACAGAAATCTTGTTTACAGTGGCTTGGCATTTGGAGCTGAACGGTGGCTTACTACACTCCAGCGAATGTGTGAAAGATTTGCTTGTCAAATGGTGACAGGCAATTCTACCCATCTTGGAGGAGTGATTCCATCACTGGATGGCAAGAAGAGCATGATGAAACTTGCACAAAGGATGGTCAGCAGTTTCTGTGCAAGCGTTAGCTCATCAAGTGTCCATAGATGGACATCACTGTCTGGGTTGAATGATGTTGGAGTCAAAGTCACTGTCCATAAGAACAATGATCCTGGCCAACCTAATGGCGTGGTGCTAAGTGCAGCCACTACCATATGGCTCCCCCTTCCTCCTCAGACTGTGTTCGGTTTCTTCaaggatgaaagaaaaagacctCTGtGGGATGTTCTCTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGGTCACACCCTGGTAACTGCATATCAGTTATGAGAGCTTTCAACACCAGCCAGAATAACATGCTGATACTCCAAGAGAGCTGCATAGACACCGCCGGTTCCCTCGTGGTGTATTGCCCCGTTGAGCTGCAATACATCAACATAGCAATGAGTGGTGAAGACACTTCATGCATCCCTCTGCTACCATCTGGCTTCACCATTTCACCTGATGGCCAACCTGACCAAGGAGGAGCAGGAGAAGGAGCTTCCACAAGCTCAAACCCAGGGAAGACTTCAGGTTCACTAGTCACTGTTGCATTTCAGATTCTAGTGAGTAGTCTGCCATCTGCTAAGCTCAACATAGAGTCGGTGACCACCGTTAATAACCTCATCGGTACCACTGTCCAGCAAATAAAGGCTGCCTTGAATTGTCCTAGTTCCTG 2123 0.455 MEFGSGGSGSPEDHDGSDSQRRKRYHRHTAHQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPHLNEDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGSFGSHILGGPSLDLDLLPGSSSSIPNLPYQPACLSDMDKSLMTDIAANALEELLRLLQTNDPFWMKSKTDGREILNLETYERMFPRANSQLRNPNIRVEASRESGVAIMNALNLVDMFMDPNKWMELFPTIISVARTIEVISSGMLGGHSGSLQLMYGELQVLSPLVPTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNHFSPQFQCHRRPSGCLIQDMPNGYSKVIWVEHIEIEDKTPIHRLYRNLVYSGLAFGAERWLTTLQRMCERFACQMVTGNSTHLGGVIPSLDGKKSMMKLAQRMVSSFCASVSSSSVHRWTSLSGLNDVGVKVTVHKNNDPGQPNGVVLSAATTIWLPLPPQTVFGFFKDERKRPLWDVLSNGNAVQEVAHIANGSHPGNCISVMRAFNTSQNNMLILQESCIDTAGSLVVYCPVELQYINIAMSGEDTSCIPLLPSGFTISPDGQPDQGGAGEGASTSSNPGKTSGSLVTVAFQILVSSLPSAKLNIESVTTVNNLIGTTVQQIKAALNCPSS 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00952 707 SUPERFAMILY Bet v1-like 466 699 - -
Bva04g00952 707 ProSitePatterns 'Homeobox' domain signature. 54 77 IPR017970 GO:0000981|GO:0006355
Bva04g00952 707 SMART START_1 219 444 IPR002913 GO:0008289
Bva04g00952 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 705 IPR042160 -
Bva04g00952 707 MobiDBLite consensus disorder prediction 636 657 - -
Bva04g00952 707 MobiDBLite consensus disorder prediction 1 28 - -
Bva04g00952 707 CDD homeodomain 21 80 IPR001356 GO:0003677
Bva04g00952 707 SUPERFAMILY Homeodomain-like 14 82 IPR009057 -
Bva04g00952 707 Coils Coil 127 147 - -
Bva04g00952 707 ProSiteProfiles START domain profile. 210 447 IPR002913 GO:0008289
Bva04g00952 707 Pfam START domain 220 444 IPR002913 GO:0008289
Bva04g00952 707 Gene3D - 10 93 - -
Bva04g00952 707 SMART HOX_1 20 83 IPR001356 GO:0003677
Bva04g00952 707 Pfam Homeodomain 22 77 IPR001356 GO:0003677
Bva04g00952 707 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Bva04g00952 707 CDD START_ArGLABRA2_like 214 443 - -
Bva04g00952 707 SUPERFAMILY Bet v1-like 211 445 - -
Bva04g00952 707 Gene3D - 218 444 IPR023393 -
Bva04g00952 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00952 Bva-Chr4 6250762 6254388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00952 20 707 Homeobox Transcription Factor Family AT1G73360 67.001 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva04g00952 START 1.5e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00952 K09338 - vvi:100251182 1149.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00952 04 6250762 6254388 Bva04g00952 04 6250762 6254388 ECH