LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g00939	ATGGCAGATACAAACTCAGTTGAAGTGATTTTGGACTTCCTGAAGAGGAATCGGTTCATGAGAGCTGAGGCAGCTTTGCGCAGTGAGCTCAATAATTGTCCTGACTTAAATGGGTTCTCTGAGAAACTTACTCTGGAAGAGAAGGCCTTAAACAATTTGTCAGAAAATAAGGGGAAGTCAGTGCTTGAAAAGCAAGGTTCTGATTCTCATGATAGTGTTGAAGTTTCTAAAGAACTGATTGTGAAAGAAATAGAGTGTGGGACTGGTAGAAATGAATATGAGAGCAAATGGAAACGTGCTCCTTCTATTGGGGAACGGAATAAATCTAATGAAGTGGTTGGCACAAGTGGCAAGGGCTTTGGTTTTTCTAAGAGCTCAGAGGACAGTGCGCTTGATCTATATACATTGAAGTTCAATTCTAGCAATGGTGCTGTGGATCCTTACCAAATTGATGGTGATAGTAGTGCCAATATTGCTTTCAAGGCCCCGGTATTTGAgcaatcaaaatatcaaactgGTGAATCTCTTAATGAGGTCAACAACAATGCAAAATCGGGAGAGGAGAATACTGTGCCTGCTGATAAAAGATCCTTGTGGATTGAAAGTAGTGTTAATGCCTCTGTAGAACTAAAGTATGAAAGTATGCAAACCAGAGAACCTAGGGAACTTGATCGGCagcttaaatttaatagttcaTCACTTAAAGAGAACTTTGCTGATAATCCCTGGGCAAGAAGTGAGGAGAATGCAAATACGTCTTCCAACTTCTGGAAAGATTGTCCTGTTAAAAccgtttttcctttttccaagGAGGAAGTGTCTACTAGCTATGATGCTGCAACTTATTCTGACAAAAATGAGGAAAAGATAAGGGGAGAAATAAGTGATATTAGAGCAGCAATAAAAGAGCAAGTGGATGAAGTGGGTAGAGTTCTTTACCTAGGTAAGTCACAAGGTAGTTCTGAACAGAAAACTATTAGCACCTTAAGTTTCCCACTTGCTCCTGAGAACCAGCAGGAAGAACTTCCTAGGCTTCCTCCTGTTAAGCTCAAGTCAGAGGATAAGCCCTTAGCTATTAGTTGGGAGGAGAAATTTGAGCGTGATGGACCTGCTTCAAAACTCACTGGCACTGACAGCAGTTTACTTATAGGGTCATATCTGGATGTGCCTGTTGGTCAGGATATTAACCCTGCAGGTATGAAGAGGGCTACTGGGGGTAGTTGGCTATCTGTAAGTCAAGGAATTGCAGAGGATGCATCTGATGTTGTATCTGGTTTTGCTACAGTTGGTGATGGTTCTGTTGACTATCCTAATGAGTATTGGGACTCTGATgaatatgatgatgatgatgatgttggATACATGAGGCAACCGATTGAGGATGAGGCCTGGTTTTTGGCACATGAAATTGATTACCCAAGTGACAATGAAAAGGGGACTGGGCATGGAAGTGTGCCTGATCCTCAGGACAGAGGTCCAGCCAAAGATGAGGATGATGATCAATCTTTTGCTGAGGAGGATTCTTACTTTTCTGGAGAACAATACCTTCAGGCAAAGAATGTCGAACCAGTCACTGCTTCAGATGATCCTATTGGTCTAACAGTGACTGAAATGTATGGAAGTAATAATGAGAATGATTTAATGGTTCAATATGATGGACGGTTGATGGATGAAGAAGAACTGAATCTGATGCGTGCAGAACCTATCTGGCAAGGCTTTGTCACTCAGTCAGATGATCTTATAATGTTGGATAGGAGAGTTCTGAATGATAGTGGAAGACCACGTCCTGAGGATGTTTGTATGGATGATGATCTGCATGGTTCAGTTAGGTCAATTGGGGTGGGAATAAACAGTGATGCTGCTGATATTGGTAGTGAAGTGCGTGAAAGTTTGGTTGGTGGTAGCAGTGAAGGAGATCTAGAGTACTTCCGCGATCATGATGTTGGACTTGGTGGCTCCAGACACTCTCATCACGATTTGGATAAGGAATCTAACaacaaagcaaacaaaaataagaaagatggCACACGTGAGTCCAACAGATATGTGGTTGGTAGTGATAGGGGTGCATGCTTGCAGATGAGAACTCATTCTGATGGGACCTTCTCATTTCCTCTATCAGTGAAAGATGGCCAGGTGATTCAGGGTGGGTCTAGTAAGTCCTTGTGGTCAAAGAATTGTAATGTTGATGAAGCTGAAGACTGTCTTAATGAGTTTGTGGGAATTGATGATATGCTTGCTCCATGGAAGCAGAAGAGCAGTGATTCTTCACCTGTTAAAAGTTCTAGGGATGAAAACAATGCTAATGGGGTAAGGTCCTCAAACTCTTCTCCAACAACAGTCTCAAACTATGGATATAATGAAAGAGAGCATCCCAAGCTAGAAGAGGATGTAAAGGCCAGTGCTACAAGGGAAGAAGATCTAGAGGCATCCCTAGAGGATGAAGAGGCTGCTGCTGTTCAAGAGcaagtaaaacaaataaaatcccAGGAAGAGGAATTTGAAACATTCAATCTGAAGATTGTGCACAGGAAAAACAGGACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGGCGCTATCATGTGACTGAATATCTGGGTTCCGCTGCATTCAGCAAAGCTATACAAGCTCATGACCTGCATACAGGCATGGATGtttgtgttaaaattataaagaacaACAAGGACTTTTTTGACCAAAGCCTTGATGAGATCAAGCTTCTCAAGTATGTCAACAAACATGATCCTGCAGACAAGTACCACATTCTTCGATTGTATGATTACTTCTATTATCGTGAGCATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATgagtttcataaatttaatagagAATCCGGAGGGGAAGTGTACTTCACAATGCCAAGATTGCAGTCAATCACTATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGACTAATACATTGTGACTTGAAGCCTGAGAATATATTGGTAAAGAGCTATAGTAGATGTGAGGTGAAGGTCATTGACCTTGGGAGTAGTTGCTTTGAAACAGATCACCTCTGCTCATATGTTCAGTCCAGATCATATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGCTGCATCTTGGCAGAGCTTTGTACTGGCATTGTCCTCTTCCAAAATGATTCACCTGCAACATTACTTGCGCGGGTGATTGGCATTATTGGTCCAATTGATCAAAGTATGCTTGCGAAAGGAAGAGATACGTACAAGCATTTCACCAAAAACCATATGCTTTATGAACGGAATCAGGAAACAAACAGGTTAGAGTACCTGATTCCAAAAAAGACATCGTTGAGGCATAGGTTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTTGCTCATTTGCTTGAGATTAATCCAAAGAAGCGGCCTTCTGCATCTGAGGCCCTGAAGCACCCATGGTTATCGTACCCTTATGAGCCCATATCATCTTG	3539	0.4012	MADTNSVEVILDFLKRNRFMRAEAALRSELNNCPDLNGFSEKLTLEEKALNNLSENKGKSVLEKQGSDSHDSVEVSKELIVKEIECGTGRNEYESKWKRAPSIGERNKSNEVVGTSGKGFGFSKSSEDSALDLYTLKFNSSNGAVDPYQIDGDSSANIAFKAPVFEQSKYQTGESLNEVNNNAKSGEENTVPADKRSLWIESSVNASVELKYESMQTREPRELDRQLKFNSSSLKENFADNPWARSEENANTSSNFWKDCPVKTVFPFSKEEVSTSYDAATYSDKNEEKIRGEISDIRAAIKEQVDEVGRVLYLGKSQGSSEQKTISTLSFPLAPENQQEELPRLPPVKLKSEDKPLAISWEEKFERDGPASKLTGTDSSLLIGSYLDVPVGQDINPAGMKRATGGSWLSVSQGIAEDASDVVSGFATVGDGSVDYPNEYWDSDEYDDDDDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQDRGPAKDEDDDQSFAEEDSYFSGEQYLQAKNVEPVTASDDPIGLTVTEMYGSNNENDLMVQYDGRLMDEEELNLMRAEPIWQGFVTQSDDLIMLDRRVLNDSGRPRPEDVCMDDDLHGSVRSIGVGINSDAADIGSEVRESLVGGSSEGDLEYFRDHDVGLGGSRHSHHDLDKESNNKANKNKKDGTRESNRYVVGSDRGACLQMRTHSDGTFSFPLSVKDGQVIQGGSSKSLWSKNCNVDEAEDCLNEFVGIDDMLAPWKQKSSDSSPVKSSRDENNANGVRSSNSSPTTVSNYGYNEREHPKLEEDVKASATREEDLEASLEDEEAAAVQEQVKQIKSQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGIVLFQNDSPATLLARVIGIIGPIDQSMLAKGRDTYKHFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEINPKKRPSASEALKHPWLSYPYEPISS	1179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g00939	1179	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	994	1006	IPR008271	GO:0004672\|GO:0006468
	Bva04g00939	1179	MobiDBLite	consensus disorder prediction	788	807	-	-
	Bva04g00939	1179	MobiDBLite	consensus disorder prediction	472	505	-	-
	Bva04g00939	1179	PANTHER	-	2	1177	-	-
	Bva04g00939	1179	MobiDBLite	consensus disorder prediction	749	814	-	-
	Bva04g00939	1179	MobiDBLite	consensus disorder prediction	644	681	-	-
	Bva04g00939	1179	CDD	PKc_DYRK_like	868	1170	-	-
	Bva04g00939	1179	Gene3D	Transferase(Phosphotransferase) domain 1	922	1170	-	-
	Bva04g00939	1179	Coils	Coil	36	56	-	-
	Bva04g00939	1179	MobiDBLite	consensus disorder prediction	750	786	-	-
	Bva04g00939	1179	MobiDBLite	consensus disorder prediction	644	682	-	-
	Bva04g00939	1179	ProSiteProfiles	Protein kinase domain profile.	868	1170	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva04g00939	1179	Pfam	Protein kinase domain	868	1170	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva04g00939	1179	Gene3D	Phosphorylase Kinase; domain 1	862	949	-	-
	Bva04g00939	1179	SUPERFAMILY	Protein kinase-like (PK-like)	857	1172	IPR011009	-
	Bva04g00939	1179	SMART	serkin_6	868	1170	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva04g00939	1179	Coils	Coil	805	825	-	-
	Bva04g00939	1179	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	2	1177	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g00939	Bva-Chr4	6153255	6163414	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva04g00939	867	1165	MAP Kinase Gene Family	AT5G19010	31.348	6.20e-30	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-PRP4	Bva04g00939		Pkinase	5.4e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva04g00939	-		-	lang:109331412	1820.82