Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00931 ATGTTCGCCAATAACTCTCCGTCTCCATCAGTTCCAGCTTCTGAGCCATTCTCCTGTGCAGAGAATGCTGCTGCTGCTACTAATAAGAGGAAGAGAAGGCCTGCAGGAACCCCAGATCCAGATGCAGAGGTGGTGTCCCTCTCGCCCAAGACACTATTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAAAACCTGCAGATGCACCGGCGGAGGCACAAGGTGCCTTGGAAGCTGCTGAAGAGGGAGACACCGGTGGTGAGGAAGAGAGTTTTCGTGTGCCCTGAGCCAACTTGCTTGCACCACGACCCGTGTCATGCCCTTGGTGATCTCGTTGGGATAAAGAAGCATTTCAGAAGGAAACACAGCAATCACAAGCAATGGGTTTGCCAGAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCCCATCTAAAGACCTGCGGCACCCGTGGCCATTCCTGCGATTGTGGTCGTGTTTTCTCAAGGGTGGAGAGCTTTATCGAACACCAAGATGCTTGCAACATGGGGCGTCTCCGCCCGGAATCGCAGCCATTGCAGCCTCCACCGTGTTTGTCTCGAACCGCTTCGAGCCGGAGCCCGTCCAGCGAAACAAATTTCAGCACAGGTCCATGGCCAGGTCTGGTAATGGCTCCAAAGCCAGCTGAACCTTTATTCCTGAACAATAACCCTCCTGCTGAAACCCCTTCTAAAAACAATAACTATGGCAACAAGAAGCTGTTTCCAAACTTGGAGCTTCAGctctccaccaccaccacttCAAATCCCATTGAAATAATAGCAGTTTCCCCCAAGAGAGGTGAAACCCATTCTACCCAGTTGCAGCTCTCAATTGGGTCATCGGAGATAAGTGAGAAAAACGAATCAAACAATAGGAATTCGCCAAAGGAAAGCAGCAACAGCAGTGAGAAGCCAGGCGGTGGTGCAGTGGCCGCGTTGAGGGTTCAAGAGCAAGCAAGGGAGCAGTTGAGGATAGCCATGGCGGAAAAGACATATGCTGAGGAGGCAAGGAAGCAAGCCAAGAGACAGATTGAACTGGCAGAGCAAGAGTTCACAAACGCCAAGAGAATTAGACAACAAGCACAAGTTGAACTAGACAAAGCTTTTGCCTTGAAAGAACATGCAATCAAGCAGATAAATTCCACTATGCTTCAAATCACTTGCCATTCTTGTAAGCAGCAATTCAAAGCACGAACGACAACAACTACAACTACTTCTGCAACTCCTGTTCCCCCCTACGAGAACTCTTTGGTATTAAGCTACATGTCGTCTGCAATAACAACAGAAGGTGGTGGCGAAGtaatagagaaaaatgatCATGGAAAAGATCATTCCAAAATCAGCAACAAGACCTA 1403 0.4797 MFANNSPSPSVPASEPFSCAENAAAATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCQRCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPPPCLSRTASSRSPSSETNFSTGPWPGLVMAPKPAEPLFLNNNPPAETPSKNNNYGNKKLFPNLELQLSTTTTSNPIEIIAVSPKRGETHSTQLQLSIGSSEISEKNESNNRNSPKESSNSSEKPGGGAVAALRVQEQAREQLRIAMAEKTYAEEARKQAKRQIELAEQEFTNAKRIRQQAQVELDKAFALKEHAIKQINSTMLQITCHSCKQQFKARTTTTTTTSATPVPPYENSLVLSYMSSAITTEGGGEVIEKNDHGKDHSKISNKT 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00931 467 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Bva04g00931 467 SMART c2h2final6 58 80 IPR013087 -
Bva04g00931 467 SMART c2h2final6 135 162 IPR013087 -
Bva04g00931 467 SMART c2h2final6 99 129 IPR013087 -
Bva04g00931 467 MobiDBLite consensus disorder prediction 239 254 - -
Bva04g00931 467 MobiDBLite consensus disorder prediction 449 467 - -
Bva04g00931 467 MobiDBLite consensus disorder prediction 279 326 - -
Bva04g00931 467 MobiDBLite consensus disorder prediction 282 321 - -
Bva04g00931 467 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Bva04g00931 467 MobiDBLite consensus disorder prediction 1 15 - -
Bva04g00931 467 MobiDBLite consensus disorder prediction 198 219 - -
Bva04g00931 467 Gene3D Classic Zinc Finger 46 131 - -
Bva04g00931 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Bva04g00931 467 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 445 - -
Bva04g00931 467 MobiDBLite consensus disorder prediction 447 467 - -
Bva04g00931 467 PANTHER OS03G0310200 PROTEIN 1 445 IPR039288 GO:0009630
Bva04g00931 467 Coils Coil 346 380 - -
Bva04g00931 467 MobiDBLite consensus disorder prediction 1 44 - -
Bva04g00931 467 MobiDBLite consensus disorder prediction 187 254 - -
Bva04g00931 467 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00931 Bva-Chr4 6099875 6102637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00931 22 449 C2H2 Transcription Factor Family AT1G25250 54.651 5.29e-146 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g00931 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00931 K25871 - gmx:100800187 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00931 04 6099875 6102637 Bva05g00243 05 1185211 1186500 ECH
Bva04g00931 04 6099875 6102637 Bva04g00931 04 6099875 6102637 ECH