Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00918 ATGGTGTTAGGCTggggaagaaggaagaagagccACCGGGCCGGGCGAAAACCCGAAATGGAGCTGGTGATTCCCAACCATTTCAGGTGCCCAGTTTCTCTTGACTTGATGAAAGATCCTGTGACATTGTCGACTGGGATCACCTATGATAGAGAAAGCATTGAGAGGTGGTTTGAAGATGGGAATTACACATGCCCCGTTACCAATCAGATTCTGAGAAACTTTGATCTGATTCCCAACCATACACTTAGAATAATGATTCAAGATTGGTGTGTAGATAATAAGCAATATGGGGTTGAGAGAATCCCAACTCCCAGAATACCCATTTCCCCAATTGACGTCTCTGAGGTTCTTCTGCATCTAAAAGCCTCTGCTAGACGCTTAGATCCATATGGGTGCTCAGAAATGGTGCAGAAAATTGAGAGATGGGGTGAAGAGAGTGAGAGAAACAAGAGATGTATATTAGAGAATGGAGCTGCTGGTGCATTGGCATCTGCATTCGATGCTTTTGCAAAAGACTCTGTTGAAAAGCATGTGAGTGTTTTAGAAGAGATTTTGTCTGCTCTAAATTGGACTTTTCCTCTGCAACCAGAAGCCCAGAAATGCTTGGGATCTAAGGCTTCTCTACGTTGCATGGTTTGGTTTTTGAAGAACCAAGATCTTTCAGGGAAGCACAAAGCCATTGTTGCTCTCAAGGAACTGCTTTCATTTGGTGATCAGCAGCATTTGGAGGCTCTGGCAGAAATTGAAGGAGTCAACGAGTTGCTAATGGGATTTATCAGCAGAAGAATTTCCCCAACAATTACAAAAGCTTCATTGGCTGTGGTCTTGCACATGGTTTCATCTTCTTATCCTTCAAATGAGAAGATTAAACTGGCATTTATTGAATCTGGGTTGGTTTCTTTGGTGCTGGAGATTCTCATTGACTCAGAAAAGAGCCCATCTGAGAAGGCTTTGGGCATTTTTGACTCACTCTGCACTTGTGAACAAGGGAGAGAACAAGCTTATGGCAATGCTCTGACCATTCCAGTGTTGGTGAAGAAAATTCTAAGAGTCTCAACAATTGCCACAGAGTTCTCTGTTTCTGCAATTTGGAAGCTCTGCAAGAATGGAGAGAATGATGAAGGAAGAGTTCTAGTTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAACTCTTGTTGGTATTGCAGGTTGGTTGTGGTGATGACACCAAAGAGAAAGCAACAGAGCTTCTGAAATTGTTGAATCCTCATAGGGCTGGCGTGGAATGCATAGAGACAGCAGATTTCAAGAATCTCAAGAGATCATTCTG 1310 0.4244 MVLGWGRRKKSHRAGRKPEMELVIPNHFRCPVSLDLMKDPVTLSTGITYDRESIERWFEDGNYTCPVTNQILRNFDLIPNHTLRIMIQDWCVDNKQYGVERIPTPRIPISPIDVSEVLLHLKASARRLDPYGCSEMVQKIERWGEESERNKRCILENGAAGALASAFDAFAKDSVEKHVSVLEEILSALNWTFPLQPEAQKCLGSKASLRCMVWFLKNQDLSGKHKAIVALKELLSFGDQQHLEALAEIEGVNELLMGFISRRISPTITKASLAVVLHMVSSSYPSNEKIKLAFIESGLVSLVLEILIDSEKSPSEKALGIFDSLCTCEQGREQAYGNALTIPVLVKKILRVSTIATEFSVSAIWKLCKNGENDEGRVLVEALQVGAFQKLLLVLQVGCGDDTKEKATELLKLLNPHRAGVECIETADFKNLKRSF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00918 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Bva04g00918 436 Pfam U-box domain 24 95 IPR003613 GO:0004842|GO:0016567
Bva04g00918 436 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Bva04g00918 436 SUPERFAMILY RING/U-box 19 100 - -
Bva04g00918 436 CDD RING-Ubox_PUB 28 70 IPR045210 -
Bva04g00918 436 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 436 - -
Bva04g00918 436 SUPERFAMILY ARM repeat 140 414 IPR016024 -
Bva04g00918 436 PANTHER WDSAM1 PROTEIN 15 436 IPR045185 GO:0061630
Bva04g00918 436 Gene3D - 117 412 IPR011989 -
Bva04g00918 436 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00918 Bva-Chr4 6010599 6012196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00918 17 436 U-box Gene Family AT5G37490 46.099 1.03e-118 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00918 - - gmx:100794340 628.632