Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00879 ATGTGGATGGTGGGTTATAATGGAAGTGATGATTTCAACATAGCTGATCATGGAAGGAAACTCAGGCCTCTTATTCCAAGGCTTCACAATAACTCTTCATCTACAACCTCTCCTTCCTTGAGTCGTTTTTGTGGCACCGATTTCTTCTCACAATATCATAATCTAGCATCAGTAGCAGATCAGCAGGGCAAGAAAGACTTGAATAACTCACCAGTTGTGTTGAGTTCGAGGTGGAATCCAACACCAGAGCAGCTGAGAGCCCTTGAAGAATTATATCGAAGAGGGACAAGAACACCATCTGCAGAACAAATTCAGCATATCACTGCACAGCTTAGGAGATTTGGTAAAATCGAAGGAAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAGAAACGTCGCCGTCAAATGGAATCAGCTGCTGAGGCCGGTCACCCCCGTGATTTTGATACTCTAGACAAGAAAGACTtggGTGCAAGCAAGATAGTTTTTGAAGTTGAACAGACCACGACCTGGGCACCCTCTTCCAACTGCAGTGTTCTTGCAGAGGAATCTATCTCAATACAAAGGGCAGCAAAAGCAGCTGTAGCAGAGTGTAGAGCAGATGGAAGGTTCCAATTCAACGAAGGAGAATTACATCAAAGAATAAGGTTTACAGAAAGGAATGCCACATGGCACAGGATGCAGCTCTCTTGTCCACCTCCTCCTCCTGCAGCTGCCACCCAGCTCATAAACACTTCCCCTAGTAATATTGCTACTACAACCACTGTAGCAACTAGACCAATGGACCCAAAGCTCATTACCCATGATCTCAGCTTCTTTATTTCTCCCCACAGAGCAAATGGGGTTGCCCACTTAAACAGTCTTAGAAGTGAAAAAGATCATAACTGTGTGGAATCACAAACCCTTCAGCTTTTCCCACTAAGGAGTGGTGATGGCAGTGATAACATTAATCAAAAGGAGACAGAAATATCAGCTTCAGCAATGAATGCCAACTTGACACCAAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTA 1052 0.4363 MWMVGYNGSDDFNIADHGRKLRPLIPRLHNNSSSTTSPSLSRFCGTDFFSQYHNLASVADQQGKKDLNNSPVVLSSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEAGHPRDFDTLDKKDLGASKIVFEVEQTTTWAPSSNCSVLAEESISIQRAAKAAVAECRADGRFQFNEGELHQRIRFTERNATWHRMQLSCPPPPPAAATQLINTSPSNIATTTTVATRPMDPKLITHDLSFFISPHRANGVAHLNSLRSEKDHNCVESQTLQLFPLRSGDGSDNINQKETEISASAMNANLTPSQFFEFLPLKN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00879 350 MobiDBLite consensus disorder prediction 134 156 - -
Bva04g00879 350 MobiDBLite consensus disorder prediction 137 156 - -
Bva04g00879 350 Pfam Homeodomain 76 135 IPR001356 GO:0003677
Bva04g00879 350 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 31 350 IPR044555 GO:0003700|GO:0099402
Bva04g00879 350 ProSiteProfiles 'Homeobox' domain profile. 81 136 IPR001356 GO:0003677
Bva04g00879 350 CDD homeodomain 77 137 IPR001356 GO:0003677
Bva04g00879 350 SMART HOX_1 73 140 IPR001356 GO:0003677
Bva04g00879 350 PANTHER WUSCHEL, PUTATIVE-RELATED 31 350 - -
Bva04g00879 350 Gene3D - 74 136 - -
Bva04g00879 350 SUPERFAMILY Homeodomain-like 76 142 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00879 Bva-Chr4 5777754 5779971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00879 1 350 Wox Gene Family AT3G18010 39.547 6.85e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Bva04g00879 Homeodomain 1.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00879 - - gmx:100777274 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00879 04 5777754 5779971 Bva03g00746 03 4459449 4462269 ECH
Bva04g00879 04 5777754 5779971 Bva04g00879 04 5777754 5779971 ECH