Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00871 ATGGACCCAACCTCGATCCCTCCGGCCCCCAACGCCACCCCCTTCCCTCCCTTCCCCGCCGTAGCAACTCCCTCCACCGCCGTCCCTTTCCCCCCTGTATCTGTCCCTGTTCCCCCTCCCGTTCCCGCTTCCGCTCCTGTCCCTGCCCCCGGTCCGGTCGAAGCTAATAATCACGTGACTGCTGCCGCCAACGCTAACCCGAGTGCTACTTCTGCCCCTGCTCCGAGACACCCTCCCTATGCTGATATGATATTTTCAGCAATCGGGGCtctgaaggagaaaaatggtTCCAGCAAGAGAGCTATCACCAAGTACATAGAGCAAGTGTACCGAGACCTTCCTCCTGCTCACTCTTCCTTGTTGACTCACAATCTGAAACGCTTGAAAGACAGTGGTCAACTTGATATGGTCAAGAAATCTTACAAGCTTCCTAGATCTGATGGCTCAGCTCCTACTCCCCCAAGGGGTCGTGGGCGCCCCCCCAAGCTCAAGCCGCAGCCTCTACACCAGCCGCAGCATCTCCAAGCCCAGCCACAGTTTGAGTCCCAGCCGCGGCTCGGAGACCAGACATTTCCTCAGCCTGTTTCCCAAACCTTGCCTGTGCCCAACGTGCAGCAAAATGCTGAGCCAGTGTGGGTTGCTCTTGGACTAGGGGATGAGCCGGTTGAGGTGAAGAAGAGGGGCCCTGGTCGTCCCCGGAAGAGTGGGGTTGGGGTCGAAGGCACAATGGGCCAAGCTGTGCCGGCCGGGCGTAGAGGGCGTCCACCTGGTTCAAAAAATAGGCCGGGAAGGCCGAGGCTATCGAAAAGGCCTGGTCGTCCTCCGAAGCCCAAATCTCTGTCGACTATCTCTAATGGGCTCAAGAGGCGACCAGGTCGCCCGCCCAAAATCCAATCGAAACCAACGGTCATTCCCTTCGCTCCTTCTGTACCTGCCGTACCAGCGCCAGGGGAAACCGTACCCGCTGTACAACCAACTGTACCAACGTCTACCGCACCTCCTGCTACCATACCTGTATCTCCAAGGCCTAGAGGACGGCCGAGGAAGAATGCTGCAGCTGTGCAAGCTTACGGAGCTGCAGTACATGCTATTGCTGGTGTTGGTCGAGGACGAGGCCGCGGCCGGGGACGGGGACGTGGAGTGGGTCGACCTCCTAAGAGTGCTGTCGCTGGGAGGCCCAAAATTCCCGGTGCTAGACCCGTGGGTCGGCCAAAGAAGGGAACGACTGCTGCTGGCATTTCAGGAAACGCAGTCAATGATGAGCTTAGGGGGAAGCttgaatattttCAATCTAAAGTGAAGGAATCTCTTGATGTGCTCAAGCGTCATTTTAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATCCAGGACTTGGAGATACTGTCGACGATGGATCTTAACGCACCATTAAGAGATGAAACACAGCAAGAGCAACAGCAGCAACAATTGCCACAGCATCAGCTGCCGCGGCAGCAACATCTATTTGCACAACCACAGCAAGTGTTGCAGCACCAATCATTTGTACAATCACAGCATGTGCCGCAGCAGCCGCAGTTTTATCTACAGGAAATGCCACAGCCACAGCAACTATTTCAGCCACAAGGATCAGCCCCGAGTTA 1622 0.5543 MDPTSIPPAPNATPFPPFPAVATPSTAVPFPPVSVPVPPPVPASAPVPAPGPVEANNHVTAAANANPSATSAPAPRHPPYADMIFSAIGALKEKNGSSKRAITKYIEQVYRDLPPAHSSLLTHNLKRLKDSGQLDMVKKSYKLPRSDGSAPTPPRGRGRPPKLKPQPLHQPQHLQAQPQFESQPRLGDQTFPQPVSQTLPVPNVQQNAEPVWVALGLGDEPVEVKKRGPGRPRKSGVGVEGTMGQAVPAGRRGRPPGSKNRPGRPRLSKRPGRPPKPKSLSTISNGLKRRPGRPPKIQSKPTVIPFAPSVPAVPAPGETVPAVQPTVPTSTAPPATIPVSPRPRGRPRKNAAAVQAYGAAVHAIAGVGRGRGRGRGRGRGVGRPPKSAVAGRPKIPGARPVGRPKKGTTAAGISGNAVNDELRGKLEYFQSKVKESLDVLKRHFNHESPVTAIAAIQDLEILSTMDLNAPLRDETQQEQQQQQLPQHQLPRQQHLFAQPQQVLQHQSFVQSQHVPQQPQFYLQEMPQPQQLFQPQGSAPS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00871 540 MobiDBLite consensus disorder prediction 257 273 - -
Bva04g00871 540 MobiDBLite consensus disorder prediction 368 417 - -
Bva04g00871 540 MobiDBLite consensus disorder prediction 131 203 - -
Bva04g00871 540 SUPERFAMILY "Winged helix" DNA-binding domain 74 148 IPR036390 -
Bva04g00871 540 Gene3D - 73 153 IPR036388 -
Bva04g00871 540 MobiDBLite consensus disorder prediction 327 341 - -
Bva04g00871 540 SMART h15plus2 74 140 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g00871 540 MobiDBLite consensus disorder prediction 1 55 - -
Bva04g00871 540 SMART AT_hook_2 341 353 IPR017956 GO:0003677
Bva04g00871 540 SMART AT_hook_2 288 300 IPR017956 GO:0003677
Bva04g00871 540 SMART AT_hook_2 249 261 IPR017956 GO:0003677
Bva04g00871 540 SMART AT_hook_2 154 166 IPR017956 GO:0003677
Bva04g00871 540 SMART AT_hook_2 398 410 IPR017956 GO:0003677
Bva04g00871 540 SMART AT_hook_2 226 238 IPR017956 GO:0003677
Bva04g00871 540 SMART AT_hook_2 378 390 IPR017956 GO:0003677
Bva04g00871 540 SMART AT_hook_2 268 280 IPR017956 GO:0003677
Bva04g00871 540 MobiDBLite consensus disorder prediction 170 203 - -
Bva04g00871 540 PRINTS AT-hook-like domain signature 339 349 IPR017956 GO:0003677
Bva04g00871 540 PRINTS AT-hook-like domain signature 247 258 IPR017956 GO:0003677
Bva04g00871 540 PRINTS AT-hook-like domain signature 154 164 IPR017956 GO:0003677
Bva04g00871 540 PANTHER HISTONE H1 54 482 - -
Bva04g00871 540 CDD H15 74 155 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g00871 540 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 76 145 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g00871 540 Pfam linker histone H1 and H5 family 77 138 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g00871 540 MobiDBLite consensus disorder prediction 1 49 - -
Bva04g00871 540 MobiDBLite consensus disorder prediction 472 540 - -
Bva04g00871 540 PANTHER HISTONE H1-LIKE 54 482 - -
Bva04g00871 540 MobiDBLite consensus disorder prediction 220 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00871 Bva-Chr4 5719630 5723368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00871 63 146 Single Myb Histone (SMH) Gene Family AT1G49950 38.372 1.58e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00871 - - aprc:113856313 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00871 04 5719630 5723368 Bva04g00871 04 5719630 5723368 ECH