Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00857 ATGGATATCGAGGAGGACATCCGTTCTTTACAACTTGATTCTGCAGCAGAAGATAACAATGGGGTTGTAAATCCGGAGGATGCTAAGCTGGAAGAGGTTGAGAAATCTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGAACAGCCTGTCCAGGCTGAGACTAAAGTGAAAGATAAGGAAGTATCCTCTGTGGCAGacaaagaggaagaggaagaattGAATAGGAAAAGACACTTGAATGTTGTCTTTATTGGCCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTTAGTGGTCAGGTTGATGATCGTACTAtccaaaaatatgagaaagaaGCTAAGGACAAAAGTAGGGAGAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTGAAGGGAAAAACAGTTGAAGTTGGAAGAGCACATTTTGAAACAGAGACAACAAGGTTTACAATTTTGGATGCCCCTGGTCACAAAAGTTATGTTCCCAACATGATTAGTGGTGCATCTCAAGCCGACATAGGAGTATTGGTAATTTCTGCTCGGAAGGGAGAATTTGAGACTGGATATGAGAGAGGAGGACAGACTCGTGAACATGTCCAACTTGCAAAAACATTGGGTGTGGCTAAGCTTCTCGTTGTTGTCAATAAAATGGATGAGCCTACAGTGAACTGGTCAAAAGAAAgGTATGATGAAATTGAAGGGAAGATGACCCCATTTCTAAAGTCATCAGGCTATAATGTGAAGAAAGATGTCCTATTCTTACCAATATCTGGTCTGATGGGTCTAAACATGAAAACAAGATTGGATAAAAACATTTGTTCATGGTGGAATGGCCCTTGCCTCTTTGAAGCTCTTGATGCTATTGAAGTTCCCCTTCGAGATCCCAAAGGTCCTTTCagGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGAAAAGTGGAGTCTGGTAGTGTTAGAGAGGGGGATTCCTTGTTGGTTATGCCAAATAAgGTTCAAGTAAAAGTTCAGGCCGTGTTTATAGATGAAGATAGGGTTAAGCGTGCTGGACCTGGTGAAAACTTACGAATTAGATTATCTGgtgttgaagaagaagacatACTGTCTGGGTTTGTTTTATCAAGTGTTGCAAATCCAGTACCAGCTGTTACTGAGTTTGTGGCTCAGCTGCAGATCCTTGAACTGCTGGACAATGCTATTTTTACTGCTGGGTATAAGGCTGTTCTGCATATCCACTCTGTAGTTGAAGAATGTGAGATTGTTGAGCTCTTACAGCAAATTGATCCTAAGACAAAGAAACctgtgaagaagaaaattctctTTGTGAAGAATGGTGCTGTTGTTGTATGCCGTATTCAGGTTACTAACATGATATGCATAGAAAAGTTCTCTGATTTTCCCCAACTTGGGAGGTTCACTCTTCGTACTGAAGGAAAAACTGTTGCTGTGGGAAAAGTAACTAGTGTTTA 1514 0.391 MDIEEDIRSLQLDSAAEDNNGVVNPEDAKLEEVEKSDKMDEDPKQEVQEQPVQAETKVKDKEVSSVADKEEEEELNRKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVNWSKERYDEIEGKMTPFLKSSGYNVKKDVLFLPISGLMGLNMKTRLDKNICSWWNGPCLFEALDAIEVPLRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKVQVKVQAVFIDEDRVKRAGPGENLRIRLSGVEEEDILSGFVLSSVANPVPAVTEFVAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTKKPVKKKILFVKNGAVVVCRIQVTNMICIEKFSDFPQLGRFTLRTEGKTVAVGKVTSV 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00857 504 Pfam Elongation factor Tu GTP binding domain 78 280 IPR000795 GO:0003924|GO:0005525
Bva04g00857 504 Gene3D Translation factors 307 392 - -
Bva04g00857 504 CDD EF1_alpha 82 302 - -
Bva04g00857 504 MobiDBLite consensus disorder prediction 1 74 - -
Bva04g00857 504 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 78 307 IPR000795 GO:0003924|GO:0005525
Bva04g00857 504 PANTHER BNAA06G12300D PROTEIN 2 498 - -
Bva04g00857 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 313 IPR027417 -
Bva04g00857 504 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 134 149 IPR031157 -
Bva04g00857 504 PRINTS GTP-binding elongation factor signature 221 230 IPR000795 GO:0003924|GO:0005525
Bva04g00857 504 PRINTS GTP-binding elongation factor signature 82 95 IPR000795 GO:0003924|GO:0005525
Bva04g00857 504 PRINTS GTP-binding elongation factor signature 161 171 IPR000795 GO:0003924|GO:0005525
Bva04g00857 504 PRINTS GTP-binding elongation factor signature 177 188 IPR000795 GO:0003924|GO:0005525
Bva04g00857 504 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 398 504 IPR009001 -
Bva04g00857 504 Gene3D - 38 302 IPR027417 -
Bva04g00857 504 MobiDBLite consensus disorder prediction 24 74 - -
Bva04g00857 504 Pfam Elongation factor Tu domain 2 322 388 IPR004161 GO:0005525
Bva04g00857 504 Gene3D Translation factors 397 504 - -
Bva04g00857 504 CDD eRF3_C_III 396 502 - -
Bva04g00857 504 PANTHER TRANSLATION FACTOR 2 498 - -
Bva04g00857 504 CDD eRF3_II 309 390 - -
Bva04g00857 504 Pfam Elongation factor Tu C-terminal domain 395 504 IPR004160 -
Bva04g00857 504 SUPERFAMILY Translation proteins 301 394 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00857 Bva-Chr4 5624818 5634775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00857 78 504 Eukaryotic Initiation Factors Gene Family AT5G60390 38.799 3.78e-99 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00857 K03267 - gmx:100793653 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00857 04 5624818 5634775 Bva04g00857 04 5624818 5634775 ECH