Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00855 atgtcagACCTCGATCCGTCCAAGAAAGTAGCCGATAGATATCTCAAGCGTGAAGTCCTTGGTGAAGGTACTTATGGAGTCGTATACAAAGCCATTGATACCAAGACAGGGCAGACAGttgcaataaagaaaattcgGCTTGGCAAGCAGAAGGAAGGCGTGAATTTTACAGCTCTTAGAGAGATTAAACTGCTTAAGGAGCTAAAATATCCAAACATTATTGAGTTAATTGATGCTTTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAAACGGATCTTGAAGCTGTTATACGTGAcagaaacatttttctttccccaGCTGATATAAAATCTTACCTTCAGATGACGCTAAAAGGTCTTGCGTTCTGCCATAGGAAATGGGTTTTGCACAGGGATATGAAGCCAAACAACTTGTTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGGAGTCCTGATCGAAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTATTGTTTGGGACCAAGCAATATGGTTCAGGAGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCGTTTCTGCAGGGTTCAAGTGACATTGATCAATTAGGAAAGATATTTGCTGCCTTTGGGACTCCAACACCTTCTCAGTGGCCTGATATGGTATACCTTCCTGATTATGTCGAGTACCAACATGTTCCTGCTCCCCCTCTGCGTTCATTATTTCCAATGGCAAGTGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCCAAAGCTAGAATTTCAGCACTGCAAGCATTAGAGCATAGGTACTTTTCAACTGTGCCTCTACCTACAGATCCTGATAAGCTCCCTAGGCCTGCCCCCAAGAGAGACTCTAAGGCTTCTGATTTCAATCCACATGAGGGTCCAACTGTATTATCACCTCCAAGAAAAACTAGGAGAGTGATGCCAGGACGTGATGGATTTGAAGGAAATGCATTGCAAGGAGGCAAGATAGATGAGCCTGTTGGTGATTTCAGACAGATAAATGGTGAGAATACAGGCAAGAATGAACCAGCACCAATGTCAAtagatttttctatatttggaTTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATcacatttgaaaagaaaattagatcTAGAATTCCAGCAACCAGAATA 1247 0.3953 MSDLDPSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKYPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAFCHRKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMVYLPDYVEYQHVPAPPLRSLFPMASDDALDLLSKMFTYDPKARISALQALEHRYFSTVPLPTDPDKLPRPAPKRDSKASDFNPHEGPTVLSPPRKTRRVMPGRDGFEGNALQGGKIDEPVGDFRQINGENTGKNEPAPMSIDFSIFGLKPPNRPTINSADRSHLKRKLDLEFQQPE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00855 415 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Bva04g00855 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Bva04g00855 415 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Bva04g00855 415 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g00855 415 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Bva04g00855 415 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g00855 415 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 355 - -
Bva04g00855 415 MobiDBLite consensus disorder prediction 297 415 - -
Bva04g00855 415 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g00855 415 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Bva04g00855 415 PANTHER CELL DIVISION PROTEIN KINASE 9 355 - -
Bva04g00855 415 MobiDBLite consensus disorder prediction 306 320 - -
Bva04g00855 415 MobiDBLite consensus disorder prediction 398 415 - -
Bva04g00855 415 SUPERFAMILY Protein kinase-like (PK-like) 10 302 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00855 Bva-Chr4 5615119 5620173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00855 8 412 Core Cell Cycle Gene Families AT1G18040 76.543 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Bva04g00855 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00855 K02202 - jre:109020969 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00855 04 5615119 5620173 Bva04g00855 04 5615119 5620173 ECH