Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00842 ATGCCTGTGGTTACAGACGCCTCAACTGTAGCAGAACACATCAAATGGAGAAGACCCAGAAACCAATTTAGTCACGCCATTGCAGAAACAGATCCAAGCCCGCAAATTCCTTCCATAATCCAATCCACTCGCTGCAAATCCACGATTTCCTCTCTGCTCCTCTCTACTTTATCTAACAACAGCACAAATGAAACCATGCCGGGCAACGTCAATGGCGGCGGGCATAATcacaaaaagaagaacaatTTCTCTGCAGCAAGTTTTAGAGGACTCGGATGCACTGCTGGCGCGTCGCAGCAGGTGTCGGTTCCGGCACTGATTCGGACATCGGCGGATTGGCAGGGAAAGAAGGctagaaaaaagaagcacAAAAGGAGTAATGCAAACGGCAGCAAGACCGTTCAAGGCGTTCTTGATGGTTCAAACTCTGGGTCTGCTAATTTTGTCGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTTTCAGCAGATGCTGCTGCGTCGGTGGATTGCGTTGTGGCGAGGAAGAATGCGTCTAATAGAGGGAAGATTGACGCGGAGAAGATAAGCCACAGGGAGAGGGAGCGTCCCACTTACTTAGGGAGGCGCACTGTAAACCCTGAACCCATCTCATTTATGGACTCTGATCCTGACATCTTCGATATGCGCCATGGTTCTGACTCATGGGGAACTGCTAGATTCTATCGCCATACTCAACCCGATGTTTTTCCCGAGATTGTGATGCTTCAAGGAAGTCTGCTAATGGGAGGAAGGTTAGATTCACATGATCGATTCAGAGATTGGAGACTTGACGTTGACAACATGACATACGAGCAACTGCTTGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAAGAAGACGAAATAGGTTCAAATATTAGGAAAAGTAAGCCTCCAATCCAAACTGATACATCAACTCCTCAAGCTAGTCAGGTTGACAAAAAATGCAGCATTTGTCAGGAAGAGTATGAAGCAGATGATGAACTGGGGAAACTAAATTGTGGACATAGCTATCACGTACAATGTATAAGGCAATGGCTTGCGCAGAAGAACTTCTGCCCGGTCTGCAAGGCAGAAGTTGTGTTTCGTCAACGGGTGCCACAATCCTG 1142 0.4606 MPVVTDASTVAEHIKWRRPRNQFSHAIAETDPSPQIPSIIQSTRCKSTISSLLLSTLSNNSTNETMPGNVNGGGHNHKKKNNFSAASFRGLGCTAGASQQVSVPALIRTSADWQGKKARKKKHKRSNANGSKTVQGVLDGSNSGSANFVDFQDVWCGPGIGFSADAAASVDCVVARKNASNRGKIDAEKISHRERERPTYLGRRTVNPEPISFMDSDPDIFDMRHGSDSWGTARFYRHTQPDVFPEIVMLQGSLLMGGRLDSHDRFRDWRLDVDNMTYEQLLELGERIGHVNTGLKEDEIGSNIRKSKPPIQTDTSTPQASQVDKKCSICQEEYEADDELGKLNCGHSYHVQCIRQWLAQKNFCPVCKAEVVFRQRVPQS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00842 380 Pfam Ring finger domain 326 368 IPR001841 -
Bva04g00842 380 SUPERFAMILY RING/U-box 326 374 - -
Bva04g00842 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 372 IPR045191 GO:0061630
Bva04g00842 380 SMART ring_2 327 367 IPR001841 -
Bva04g00842 380 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Bva04g00842 380 MobiDBLite consensus disorder prediction 111 138 - -
Bva04g00842 380 CDD RING-H2_TTC3 326 368 - -
Bva04g00842 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 376 IPR013083 -
Bva04g00842 380 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 5 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00842 Bva-Chr4 5533644 5537439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00842 2 279 C3H Transcription Factor Family AT1G73760 39.262 5.50e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00842 - - gmx:100788837 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00842 04 5533644 5537439 Bva03g00697 03 4164071 4168059 ECH
Bva04g00842 04 5533644 5537439 Bva04g00842 04 5533644 5537439 ECH