Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00827 ATGGCGACGCCGTTAACGGGATTACAACACTTGGACGGAGGTGGAGGAGTGGCGGTGCTGTCGAATTCTGTGAACAAGGTCGATTCTTCCACACCCTCTTTGTCCACCTCCAATGGTGGCCTGAAATGCTCCAAATTGGATTCGTCgccaattttgattttctggtTCTTCCATAAAGCGATTCGGAATGAGCTTGATGGCTTGCATCGATTAGCCATGGCATTTGCCACGGGAAATCGCTCTGATATTCAGCCGCTGCTAGAACGTTACCATCTCCTGAGATCGATTTATAGGCACCATTCTAATGCTGAAGATGAGGTCATTTTTCCGGCTCTTGATATACGTGTCAAGAATGTAGCACAGACATATTCTCTTGAGCACAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGTTGTTAAATTCTAACACCCAGAACGATGAAAGTTTTCCAAGGGAACTAGCGTCCTGCACAGGAGCTCTGCAGACGTCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTATTGAGAAGTTTTCCCTAGAGGAACAAGCATCTTTAGTTTGGCAGTTTTTGTGTAGTATTCCGGTCAATATGATGGCAGAATTTCTTCCATGGCTTTCAACATCTATATCACCTGATGAATCTCAAGATCTACGGAAGTGTTTAAGTAAGATAGTGCCGGAGGAAAAGCTTCTTCAAAAGGTAATTTTCACCTGGATGGAAGGGAAATGTGGTGCTAACAGAGTTGAAAGTTGTGTAGATCATTCTCAGGTCCAATGTTGTCGTAGCCCATCATTCAATCAGAATGGGAAAGTAAACTGTGCATGTGAGTCCACAACAACTGGGAAGAGGAAATATGTTGAGTCTAGTGTAGATTCTGCTGATACCACTGGAACACATCCTATAGATGAAATATTGCTCTGGCACaatgcaattaaaaaagagttgAGTGAGATAGCAGTGGAGACCAGAAAGATGCAAAAATGTGGAGATTTTACCAATCTATCAGCTTTTAATGAAAGATTGCAATTTATTGCTGAAGTTTGCATTTTCCACAGTATTGCTGAGGACAAGGTTATATTTCCAGCAGTAGATGGAGAACTTTCATTCTACCAGGAGCATGCTGAAGAGGAAAGCCAACTTAATGACTTCAGGGGTTTGATTGAAGGTATTCAAAGTGAAGGAGCAACATCAAATTCAGAGGctgaattttattcaaaattatgcTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTCGGAAGCATTTTAGCTTCAAAAGGCAACGTGAACTTCTGTACCAAAGCTTGTGTATGATGCCTCTAAAATTGATTGAACGTGTCCTACCATGGTTGGTGCGATCATTACCTAAAGATGAAGCTATGATGTTTCTGCAAAACATGCAATTAGCAGCTCCAGCAACAGATTTTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGCTCATAATGACAGTTTGTGTTTGTCTTCAAATGCATCACGTTGCTGTCCTGCTCAAAGACTTACTGATATTGAAGAAGATTTTGTTCAGTCATCTTGTGCATGTTCTTCTGCGTCATGTGCTAGAGATTGCATAGTATCAGCTGAATCAGAAGAGAACAAAAGGCCATTCAAGCGAAACATATTGGAGTTATGCAAGAATGGAGATGTTTCTAAAACATCAGTGACTGAAAGTATCCAGAAAGAATGCTGTAATGCTCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGCAGTAGTAATCTGGGGCTCAGTTCTCTATCTACTGCCAAGTCTTTACGCTCCTTATCTTTCAGTTCTTCTGCCCCGTCACTTATTTCCGGTCTTTTCATATGGGAAACAGATAACAGCTTATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACTATATTTAAATTCCATAAAGCTATTCGAAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAGCTTAATGCTGGTGATGAGAATATTCTTCGGCAGTTTAGTGGGAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGACATAGTATTTCCAGCACTGGAATCCAAAGAGGCACTTCATAATGTGAGTCACTCATACATGCTAGACCATAAGCAGgaggaaaaattatttgaggaCATTTCATGTGTTCTCTCTGAGCTTTGTGTCCTTCACGAAGGTTTGCAGATGACCCATGTGACGGAGGATTTAAGTCAAAGTAATTGTGAAACTTCTGATGTCAATTGTAATGATAATATCAGAAAGTACAATGAGCTAGCAACTAAGCTTCAAGGAATGTGTAAATCCATAAGAGTGACCCTGGATCAGCatattttcatggaagaaagTCAGCTGTGGCCATTATTTGGCAAATATTTCTCCGTGGAAGAACAAGACAAGATAGTTGGCCGCATAATTGGAACCACAGGTGCTGAAGTTCTTCAATCAATGTTACCATGGGTAACTTCAGCGCTTACTCAGgatgaacaaaacaaaatgatggACACATGGAAGCAGGCAACTAAGAACACTATGTTCAACGAATGGCTTAGTGAATGCTGGAAAGAGAGTCCAGCATCTACATCACAGACAGAAACATCAGAGCAAGGGGCTCCTCAACAAGGTGCTGAATATCAAGAAAGCTTGGACCAGAATGATCAGACGTTCAAGCCTGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTTTATCGGGACTCAACTCTTGATCCAAGGAGAAAAGCATATCTTGTTCAGAATCTAATGACTAGTCGCTGGATAGCTGCACAGCAGAAGTTACCTAAAGCTATAGCTGGGGGATCTTCTAATGGTGAAGAATTAGAAGGACGTACAACATCATTTCGGGATCCAGAGAAACAAGTATTTGGCTGTGAGCACTATAAGAGAAACTGTAAACTTCGAGCTGCATGTTGTGGCAAATTGTTTACTTGTAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAGCATCAGAAATGATGTGTATGCGTTGTCTGAATATACAGCCAGTTGGGCCTATTTGCATGACACCTTCGTGTAACAGACTTTCAATGGCAAAGTATTATTGCaatatatgcaaattttttgACGATGAAAGAAATGTGTATCATTGCCCTTTTTGCAATTTATGCCGTGTGGGAAGAGGACTTGGCATTGACTATTTTCATTGCATGAAATGCAATTGTTGCCTGGGAATAAAATCTACATCGCACAAGTGCCTGGAGAAAGCTTTAGAAATGAACTGCCCAATTTGCTGTGATTTCCTGTTCACATCCAGTGCAACCGTCAGAGTTCTGCCTTGTGGCCATTATATGCATTCAGCTTGTTTTCAGGCGTACACTTGTAGTCACTACACATGCCCAATCTGCAGTAAGTCATTGGGAGATATGGCGGTGTACTTTGGTATGCTTGATGCTTTGTTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGTTATCAGGACATACTTTGCAATGACTGTGACCGTAAGGGCACTTCACGTTTCCATTGGTTATATCACAACTGTGGATTATGTGGCTCATATAACACTCGGGTTATTAAGGGTGAGCCAACAGATCCTCCCTGTTCTTA 3746 0.4031 MATPLTGLQHLDGGGGVAVLSNSVNKVDSSTPSLSTSNGGLKCSKLDSSPILIFWFFHKAIRNELDGLHRLAMAFATGNRSDIQPLLERYHLLRSIYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTQNDESFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVIFTWMEGKCGANRVESCVDHSQVQCCRSPSFNQNGKVNCACESTTTGKRKYVESSVDSADTTGTHPIDEILLWHNAIKKELSEIAVETRKMQKCGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGELSFYQEHAEEESQLNDFRGLIEGIQSEGATSNSEAEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVRSLPKDEAMMFLQNMQLAAPATDFALVTLFCGWACKAHNDSLCLSSNASRCCPAQRLTDIEEDFVQSSCACSSASCARDCIVSAESEENKRPFKRNILELCKNGDVSKTSVTESIQKECCNARSCCVPGLGVSSSNLGLSSLSTAKSLRSLSFSSSAPSLISGLFIWETDNSLCDVGSAERPIDTIFKFHKAIRKDLEYLDVESGKLNAGDENILRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSELCVLHEGLQMTHVTEDLSQSNCETSDVNCNDNIRKYNELATKLQGMCKSIRVTLDQHIFMEESQLWPLFGKYFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLSECWKESPASTSQTETSEQGAPQQGAEYQESLDQNDQTFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKAIAGGSSNGEELEGRTTSFRDPEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKAASEMMCMRCLNIQPVGPICMTPSCNRLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSTSHKCLEKALEMNCPICCDFLFTSSATVRVLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCDRKGTSRFHWLYHNCGLCGSYNTRVIKGEPTDPPCS 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00827 1248 Gene3D nmb1532 protein domain like 310 457 - -
Bva04g00827 1248 Gene3D nmb1532 protein domain like 49 199 - -
Bva04g00827 1248 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 35 1247 - -
Bva04g00827 1248 Gene3D - 1203 1243 - -
Bva04g00827 1248 ProSiteProfiles Zinc finger RING-type profile. 1132 1174 IPR001841 -
Bva04g00827 1248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1125 1176 IPR013083 -
Bva04g00827 1248 ProSiteProfiles Zinc finger CTCHY-type profile. 1068 1131 IPR017921 -
Bva04g00827 1248 Pfam Hemerythrin HHE cation binding domain 54 181 IPR012312 -
Bva04g00827 1248 Pfam Hemerythrin HHE cation binding domain 307 441 IPR012312 -
Bva04g00827 1248 Pfam Hemerythrin HHE cation binding domain 656 819 IPR012312 -
Bva04g00827 1248 CDD Hr-like 310 439 - -
Bva04g00827 1248 ProSiteProfiles Zinc finger CHY-type profile. 996 1065 IPR008913 GO:0008270
Bva04g00827 1248 CDD Hr-like 658 818 - -
Bva04g00827 1248 SUPERFAMILY RING/U-box 1130 1177 - -
Bva04g00827 1248 PANTHER CHY ZINC FINGER PROTEIN 35 1247 - -
Bva04g00827 1248 SUPERFAMILY Zinc hairpin stack 1069 1125 IPR037275 -
Bva04g00827 1248 Gene3D nmb1532 protein domain like 652 895 - -
Bva04g00827 1248 Pfam CHY zinc finger 1003 1078 IPR008913 GO:0008270
Bva04g00827 1248 MobiDBLite consensus disorder prediction 888 913 - -
Bva04g00827 1248 CDD Hr-like 57 179 - -
Bva04g00827 1248 CDD RING-H2_Pirh2 1131 1174 - -
Bva04g00827 1248 SMART ring_2 1132 1173 IPR001841 -
Bva04g00827 1248 Pfam Ring finger domain 1131 1173 IPR001841 -
Bva04g00827 1248 SUPERFAMILY CHY zinc finger-like 996 1059 IPR037274 GO:0008270
Bva04g00827 1248 Pfam Zinc-ribbon 1179 1236 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00827 Bva-Chr4 5447883 5456425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00827 1 1248 C2H2 Transcription Factor Family AT3G18290 67.647 0.0 1712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00827 K16276 - gmx:100801725 2084.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00827 04 5447883 5456425 Bva03g00667 03 3988861 3999028 ECH
Bva04g00827 04 5447883 5456425 Bva04g00827 04 5447883 5456425 ECH