Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00820 ATGTCTTCgtcatcttctttttctttatcaaagaGCTCTAGTGATGACGACAATGAGCACAGAAAAGGACCATGGACTCTTGAAGAGGACACTCTGCTCACTCAATACATTAAAAATCACGGACAAGGGTGCTGGAATCTGCTTGCAAAACGTTCAGGGCTGAGAAGAACAGGAAAGAGTTGCAGACTAAGATGGTTAAACTATCTAAAGCCAGACGTAAAACGTGGAAATTTAACCCCTCAAGAGCAGCTTTTGATTCTTGAACTCCATTCCCAGTGGGGCAACAGGTGGTCTAAGATAGCACAGCATTTGCCGGGGAGGACGGACAATGAGATCAAGAACTACTGGAGAACCCGGGTGCAGAAACAAGCAAGACAGCTTAAGATTGACACAGACAGCACTGAGTTTCAGAAATTGGTTAGGAGATTGTGGTTGCCGAGGTTGTTGCAGAAAGCAAGAgaatcatcatcttcttcttcagccATGTCACTCCATGACCAGCCAGTTCCTCTGCTTCTGGACTATGTTTCGGATCAGAATTCAGCTGTTGGGACAATCCCACCACAGATTCCAATTGTCAGTGGCCATGGCCACAACATGTGTCCTTCAGAATCGGCAAACACTTCAACTCAGTTTCATGCCTTGGACAGCAGTGACATGAGCACATTTGTGTCTGATGGCTGCTACACTGTCAATAACAATGTCTGCGACATGGAGTCCCACAACCTTGGAGCTACATTAGCAGCAGCTCAGGATATGGAATACCATGTTGAGGACTGCCAAGTGGCGCAGAGCGATTGGATGaacaatgatttttcatgTGGCATGTGGAACTTGGATGAAATATGGCAGTTTAGTAGCAACTCata 869 0.4304 MSSSSSFSLSKSSSDDDNEHRKGPWTLEEDTLLTQYIKNHGQGCWNLLAKRSGLRRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSQWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLKIDTDSTEFQKLVRRLWLPRLLQKARESSSSSSAMSLHDQPVPLLLDYVSDQNSAVGTIPPQIPIVSGHGHNMCPSESANTSTQFHALDSSDMSTFVSDGCYTVNNNVCDMESHNLGATLAAAQDMEYHVEDCQVAQSDWMNNDFSCGMWNLDEIWQFSSNS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00820 289 SMART sant 74 122 IPR001005 -
Bva04g00820 289 SMART sant 21 71 IPR001005 -
Bva04g00820 289 CDD SANT 24 69 IPR001005 -
Bva04g00820 289 MobiDBLite consensus disorder prediction 1 23 - -
Bva04g00820 289 Gene3D - 78 120 - -
Bva04g00820 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Bva04g00820 289 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 221 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bva04g00820 289 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Bva04g00820 289 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Bva04g00820 289 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Bva04g00820 289 Gene3D - 22 74 - -
Bva04g00820 289 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Bva04g00820 289 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 4 221 - -
Bva04g00820 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Bva04g00820 289 CDD SANT 79 118 IPR001005 -
Bva04g00820 289 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00820 Bva-Chr4 5421697 5422943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00820 17 285 MYB Transcription Factor Family AT1G68320 48.929 2.80e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g00820 Myb_DNA-binding 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00820 K09422 - gmx:778045 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00820 04 5421697 5422943 Bva04g00820 04 5421697 5422943 ECH