Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00808 ATGACTGCAGAAATGAAAGCAGCAAACGCCTTGGGGGCAAAAACAGCACGAGCCTGTGATAGCTGCCTCCGCAGTCGGGCACGTTGGTTTTGTGGTGCAGATGATGCTTTCCTCTGCCATGCCTGTGACACACTAGTTCACTCTGCCAATCAATTAGCAAGCAGACACGAAAGGGTTCGGCTTCAAACTGCTTCCTGTAAGGTCACTGCACAATCATGGCACAGTGGCTTCACGCGCAAGGCAAGAACCCCACGTCACAATAAGCACTTATTGGGGCAGCAACACAAACATGAAGAgctagaagaagaagatttgcTTTTGGACAGAAGTAACTGTGTTCTTCCTCTTGTTCCTGAGCTTGGAAGTGAAGAGCCTATGCTGGAGGAGACTGAGGAGCAGCTGCTATGTCGCGTGCCGGTTTTCGACCCTTTTGATGCTGGGATTTGCGGTTTATACCGTGAGATGGGAGAAGAGAGATTGGACCTCAGCACCATGAAGAAAGAGAGCGTTCATGGTGATGAAGAAACCTGTGATTTGGACAATTTATCTGAGTTTCTTCCATCGGATATGGATCTTGCAGAGTTTGCTGCTGATGTTGAGAGCTTGCTGGAAAGTCGGCTTGATGAGGATTCTGGTGAAGTGAAAGATTCAGAACAGTTTGATTgtaaggaagaagaaagagaagaagatgttGGTATACATTTCCGGACGAGAGCGGAATACGCAATGGTAAAGGTTAAGGATGAAGGAGTAGAAGCTGTTCCAGCTTGTGATCATTTGGATTCAGTTCTTGACATGGAGGGATTAAGTTGGAATATTGAATCAGAAACATTAGATGATGTGCTGCAGGAAAAGGAGGCGAAGGTGGCGGTGCTGACGGCGAAGAATGACGATGATAGTGTTGGTAAATTGGGAACAAAGAGGAAGATATTTTTGAGGCTTAACTATGAAGATGTCATTTCTGCTTGGGCCAGCCAAGGCTCTCCTTGGACAACAGGAAACCAACCTCAGTTCGTTTCTAGTGACTTCTGGCCACAATGCTTGGGTTCAAGTGGTGCAGATGTTCAGCAATGTTATGGGGAAGTGGGAAGCTTGAGGGAACATGTTAATGGAGATGGTGGAAGAGAAGCAAGAGTGTCAAGGTacagagagaagagaaggacGCGATTgtttgcaaagaaaataaggtATGAAGTGAGGAAATTGAACGCAGAGAAGAGACCTAGATTGAAAGGTCGTTTTGTGAAGAGAAGTTCCTTGGTTGGAACTGCTTCTGCTTTCCTTACCACTGACATCAACCATGCACCTAATTTCCAAGTTTGCTA 1325 0.434 MTAEMKAANALGAKTARACDSCLRSRARWFCGADDAFLCHACDTLVHSANQLASRHERVRLQTASCKVTAQSWHSGFTRKARTPRHNKHLLGQQHKHEELEEEDLLLDRSNCVLPLVPELGSEEPMLEETEEQLLCRVPVFDPFDAGICGLYREMGEERLDLSTMKKESVHGDEETCDLDNLSEFLPSDMDLAEFAADVESLLESRLDEDSGEVKDSEQFDCKEEEREEDVGIHFRTRAEYAMVKVKDEGVEAVPACDHLDSVLDMEGLSWNIESETLDDVLQEKEAKVAVLTAKNDDDSVGKLGTKRKIFLRLNYEDVISAWASQGSPWTTGNQPQFVSSDFWPQCLGSSGADVQQCYGEVGSLREHVNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRLKGRFVKRSSLVGTASAFLTTDINHAPNFQVC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00808 441 CDD Bbox1_BBX-like 18 61 - -
Bva04g00808 441 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Bva04g00808 441 Pfam CCT motif 375 417 IPR010402 GO:0005515
Bva04g00808 441 ProSiteProfiles CCT domain profile. 375 417 IPR010402 GO:0005515
Bva04g00808 441 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 423 - -
Bva04g00808 441 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 423 - -
Bva04g00808 441 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Bva04g00808 441 SMART bboxneu5 14 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00808 Bva-Chr4 5349930 5351910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00808 8 417 C2C2-CO-like Transcription Factor Family AT1G25440 42.494 6.50e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva04g00808 zf-B_box 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00808 - - adu:107478728 436.417