Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00782 atggcaaatCGACTGaaggaagatgaaaaaaatgaaagaataattCGAGGTCTTCTCAAACTTCCTGAGAATCGAAGATGTATTAACTGCAACAGCCTGGGACCACAATATGTGTGTACGAATTTCTGGACATTTGTTTGCACAAACTGTGGTGGAATACACCGGGAATTTACACATCGAgtaaaatcaatttcaatgGCCAAATTTACTTCACAAGAAGTTAGTGCACTACAGGAAGGAGGAAATAAGCGTgctaaagaaatttattttaaagagtGGGATGCACAACGGCAGTCCTTCCCTGATAGCAGTAATGTTGACAGGCTCCGGGTATTTATTAAGCATGTTTATGTAGATAGGAGGTTCAGTGGTGAGAGGACTTATGACAAACCACCCAGAGTTGATACATATCAGGGAGGGTCTAAAAGTCCACCATATGAGGAAACATATGAACGTCGTTATAGTGACAGGTCTAGTCCTGGTGGAAGAAGTTATGATGAGAGAAGAAGTCCTGGATATGACCAGGAAAGTAGGCAATATGGTGATTTCAAGAGAAGTCCCAGTCGTCCTCCCTTAGTCACTGATTGGAACCGTACAGATAGATTTGGAGATCGTAGAATATCTGATGGAGATTATAAGCCAGAAGTGCAATCACCTGACCGAGCAAAAGATTTGGGTTCTTCAAGTCCACCTGTGGTACGGCCTGTTAGAGATATTTTGGGAGAAAATGCAGTACCTCTTCGAATTAGTGAACCTCCTAAAGGGGGCAGTGGAAAGGCAGCTGACAATTCTGCACTTACACAGAAAACTACTTCTTCTAGTAGCTTGGCCTCCAGCAATGGAAACCCAGTTGAAGTTAAGTTGGAGACTACTAAGAGcctaattgattttgatgctgAGCCTGAAGCTCCGGTTGGTCCAGCAATTCCTCAAGTGCGACAAACAACTGTGGCTCAATCTCTTGTGCAGCCAGAAAAATCTGGTAGTGAAACGAACTGGGCTTCCTTTGATGCTGCCCCTGAGGCTAAAGCAAATCAAGGTCCTTCAAATGTAAATCCACTGGATTCCGTGCTATCACAATTGTCAGTGTCAGAATCTGCACCTGCAGGGCACGTGCTAGCATCAGGTCTTACTTCTACTGTTGCTGCCTCTGCAAGTGCTAGCAACTTCTCAACATTGCCAACCAGTGGTGCTTCAGTAACAGCCCCTGGATTGACAACAGTATCCCCTCTGAATGGTCCAGGCCAGTGGCATCAGCAACCTTTTTACCCTGCTACTGTTAACCAATCTGCTTCTCAACAATTTACACCACCAGTAGGTGGAGCTTTGAATAATCAGGCATGGAATATACCTCCCGCTCCAATAACACAAGGGATTAGCATGCCAACACCACATGCATCACATATTGTCTCAAAGCCTGCCAGTGCGGCTACCTCTGGTACTGTTTTGCCATCTTCTACCATGGAAGCAAAACCAAGTGGAAGAAAAGAACTTCCTGAGGATCTTTTTACTCTAAAATATCCATCCTTCCCTTCTCCAGCTCCACGGTGGCAAATTGGTCCTCCCCATGTGATGGGTATCCAAATGCAATATAATACTGTGGCGTTACAGCCTATGCCAAGTTTTCCACAATCGTCAAAATCAATGAATCCATTTGACATCAGCAGCGAGGCACATCCAATACAAACCCCAACATTTCCTTCCATGTCAACATTGCAAGGTGCTTTGCCTAGTATATCAGCTTCTTCAGGTTTGATACATCCTTCAAGCTTGGGTAATCCATCACTTGCTTGGATGCCACCCCAGTCATCATCGTATGGATCTCTACTGCCCCCACAAATACAAACTCATCAATCCGCAATGGCGTCAGGGGTGTCCGTGGGTCAACAAATGCCGACTAACATGCCAATGCCAAGGCATCAAGAAGGTGGGAGTTTTAGCACTGAGGGAGCTGCTTTTGGCTACTCAAATCCAAATCAGTTGTCAGGTAGGTTCCAGACAACGGCTACCTCCTCAAATCCCTTTCCAGCGGGTGGGAATCCATTTGGATA 2051 0.4364 MANRLKEDEKNERIIRGLLKLPENRRCINCNSLGPQYVCTNFWTFVCTNCGGIHREFTHRVKSISMAKFTSQEVSALQEGGNKRAKEIYFKEWDAQRQSFPDSSNVDRLRVFIKHVYVDRRFSGERTYDKPPRVDTYQGGSKSPPYEETYERRYSDRSSPGGRSYDERRSPGYDQESRQYGDFKRSPSRPPLVTDWNRTDRFGDRRISDGDYKPEVQSPDRAKDLGSSSPPVVRPVRDILGENAVPLRISEPPKGGSGKAADNSALTQKTTSSSSLASSNGNPVEVKLETTKSLIDFDAEPEAPVGPAIPQVRQTTVAQSLVQPEKSGSETNWASFDAAPEAKANQGPSNVNPLDSVLSQLSVSESAPAGHVLASGLTSTVAASASASNFSTLPTSGASVTAPGLTTVSPLNGPGQWHQQPFYPATVNQSASQQFTPPVGGALNNQAWNIPPAPITQGISMPTPHASHIVSKPASAATSGTVLPSSTMEAKPSGRKELPEDLFTLKYPSFPSPAPRWQIGPPHVMGIQMQYNTVALQPMPSFPQSSKSMNPFDISSEAHPIQTPTFPSMSTLQGALPSISASSGLIHPSSLGNPSLAWMPPQSSSYGSLLPPQIQTHQSAMASGVSVGQQMPTNMPMPRHQEGGSFSTEGAAFGYSNPNQLSGRFQTTATSSNPFPAGGNPFG 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00782 683 PANTHER ARF GTPASE ACTIVATOR 1 683 - -
Bva04g00782 683 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Bva04g00782 683 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Bva04g00782 683 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Bva04g00782 683 MobiDBLite consensus disorder prediction 146 183 - -
Bva04g00782 683 CDD ArfGap_AGFG 12 122 - -
Bva04g00782 683 MobiDBLite consensus disorder prediction 650 677 - -
Bva04g00782 683 MobiDBLite consensus disorder prediction 261 284 - -
Bva04g00782 683 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Bva04g00782 683 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Bva04g00782 683 MobiDBLite consensus disorder prediction 454 496 - -
Bva04g00782 683 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Bva04g00782 683 MobiDBLite consensus disorder prediction 639 683 - -
Bva04g00782 683 MobiDBLite consensus disorder prediction 472 488 - -
Bva04g00782 683 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Bva04g00782 683 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Bva04g00782 683 PANTHER ARFGAP/RECO-RELATED 1 683 IPR044820 GO:0005096
Bva04g00782 683 MobiDBLite consensus disorder prediction 198 220 - -
Bva04g00782 683 MobiDBLite consensus disorder prediction 125 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00782 Bva-Chr4 5113529 5119653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00782 12 146 C2H2 Transcription Factor Family AT4G05330 32.624 9.71e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00782 - - gmx:102669541 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00782 04 5113529 5119653 Bva10g00313 10 3897958 3903787 ECH
Bva04g00782 04 5113529 5119653 Bva04g00782 04 5113529 5119653 ECH