Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00778 ATGCCGAGCCGGTCTAGGGGAGCTATAAGGCAGGACTGGGAACCAGTGGTTCTCCATAAGTCTAAACCCAAGGCTCAGGATTTGCGCAACCCAAAGGCGGTGAACCAGGCGCTCCGGTCCGGAGTGGAGGTTCAGACGATCAAGAAGTTCGACGGCGGATCAAACAAGAAAACCGCTCCGGTGGTCAACGCGAGGAAGCTCGACGAAGGAACCGAACCGGCAGCTCTGGACCGGGTATCACCGGAGGTTAGACAAGCGATACAGAAGGCAAGGctggagaagaaaatgagcCAAGCTGAGCTGGCCAAGCAGATTAACGAACGGCCACAGGTAGTTCAAGAGTACGAGAATGGGAAAGCCGTACCCAACCAGGCCGTGTTGGCCAAGATGGAGAGGGTCCTGGGGGTGAAGCTTAGGGGCAAAATCTCCAAGTA 434 0.5415 MPSRSRGAIRQDWEPVVLHKSKPKAQDLRNPKAVNQALRSGVEVQTIKKFDGGSNKKTAPVVNARKLDEGTEPAALDRVSPEVRQAIQKARLEKKMSQAELAKQINERPQVVQEYENGKAVPNQAVLAKMERVLGVKLRGKISK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00778 144 Coils Coil 87 107 - -
Bva04g00778 144 SUPERFAMILY lambda repressor-like DNA-binding domains 83 138 IPR010982 GO:0003677
Bva04g00778 144 SMART mbf_short4 86 141 IPR001387 -
Bva04g00778 144 Pfam Multiprotein bridging factor 1 11 79 IPR013729 -
Bva04g00778 144 Gene3D - 70 144 IPR010982 GO:0003677
Bva04g00778 144 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 143 - -
Bva04g00778 144 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 143 - -
Bva04g00778 144 CDD HTH_XRE 85 138 IPR001387 -
Bva04g00778 144 Pfam Helix-turn-helix 87 138 IPR001387 -
Bva04g00778 144 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00778 Bva-Chr4 5085363 5085986 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Bva04g00778 MBF1 4.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00778 K03627 - vvi:100249249 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00778 04 5085363 5085986 Bva04g00778 04 5085363 5085986 ECH