Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00732 ATGAATCAATTGGGTATTTCCCTTTTGGTTCTCTATGCCATATTACTCAAGTTTTGCTGCAAAGCACAGACTCCAGATCCAGAAGATGGCACAACTAAATTTCAACCAAACCTTGCTGTTTTCATAGGAATTCTATGTCTCATGTTTTTCCTCACATTAATTGTTCTCATGTGTGCAAAATTCTGGCAGAGGAGAACTTCAGTTCATGGATCAGACACAGAAAATCACTCTTCACTGATAAGTCCAAAGTCGAGATTTTCAGGAATTGACAAGACTGTCATAGAATCTCTTCCCTTCTTCAGATTTTCATCCCTCAAAGGCTCCAGAGAAGGGCTAGAGTGCGCGGTGTGCCTATCGATGTTTGAAGATGTTGAAATCCTCAGGATGCTGCCTAAGTGCAGGCATGCCTTTCATATTGATTGCATTGATAATTGGCTTGAGAAACACGCAAGCTGCCCTCTTTGCAGGTGCAAGGTGAATCCTGAGGACAAGGCCAGTTTTGATGATTCAAATAGCATGAGTTTAATCCTAGCTAACCAGTCAGAGCTGGGAgaggaatcatccaacatagaGCTCTTTGttgagagagaggaagagCATAATGGGTCATCAAGTTTCAGCATTGGAAGCAGCTTcaggaaaattgaaaagggtATTGAGGAACAAGAATTGCCAATGCATCATAAGCAAAATCATAGGATTATAGTATCCGATGTTATCTTGAAGAACCGTTGGAGCAACGTGAGTTCATCGGACATCATGTTTTTGAAGTCAGAGATGCTTAGTTCCATGTCAAGCAGAAGATTCAAATGGGAATCATACAATGACCAGGAGATGGAGAGGAAGATTCCCTTTGATATAGGTCCTTCTCATACATCAGATTCTCGAGGAAATTCAAGTCATACATTAAAATATCCAAATAAAGCTGAGAAGAGATCAATGTCAGAAATCATTTCTGTCTCTAGATTTGGAGAATGGGGTATGAAAGGCAACGGGGTCTTCAGAGAATCCTCTTTGCTAGAAAACAATGTGAAAGAGGAAAGAGTGAGGCAGCTTTGGCTGCCAATTGCCAGAAGAACAGTTCAATGGTTTGTCAACAGAGAAAGGTCTCAGCAGTCTCTGATTAAACAACAGCCATTAGATATATA 1148 0.3876 MNQLGISLLVLYAILLKFCCKAQTPDPEDGTTKFQPNLAVFIGILCLMFFLTLIVLMCAKFWQRRTSVHGSDTENHSSLISPKSRFSGIDKTVIESLPFFRFSSLKGSREGLECAVCLSMFEDVEILRMLPKCRHAFHIDCIDNWLEKHASCPLCRCKVNPEDKASFDDSNSMSLILANQSELGEESSNIELFVEREEEHNGSSSFSIGSSFRKIEKGIEEQELPMHHKQNHRIIVSDVILKNRWSNVSSSDIMFLKSEMLSSMSSRRFKWESYNDQEMERKIPFDIGPSHTSDSRGNSSHTLKYPNKAEKRSMSEIISVSRFGEWGMKGNGVFRESSLLENNVKEERVRQLWLPIARRTVQWFVNRERSQQSLIKQQPLDI 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00732 382 Pfam Ring finger domain 113 156 IPR001841 -
Bva04g00732 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 166 IPR013083 -
Bva04g00732 382 SMART ring_2 114 155 IPR001841 -
Bva04g00732 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 373 - -
Bva04g00732 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 373 - -
Bva04g00732 382 SUPERFAMILY RING/U-box 93 162 - -
Bva04g00732 382 MobiDBLite consensus disorder prediction 282 308 - -
Bva04g00732 382 CDD RING-H2_PA-TM-RING 113 156 - -
Bva04g00732 382 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00732 Bva-Chr4 4801564 4802712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00732 22 382 C3H Transcription Factor Family AT2G20030 46.193 2.57e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00732 K10664 - gmx:100803207 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00732 04 4801564 4802712 Bva04g00732 04 4801564 4802712 ECH