Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00710 ATGACTGCAGTAATGTCTTCCTTTCTAAAATGCCTTCGAGGTTCCATCAATGGATCTTTCAACCTGGGATTAATTCAATCGTCTCACCGTGATATAAAATTTGCGAGATATGCTAATCACTTTCGTGTAAGATTGACAAGTGATTCACGGGATTGTGTTTATTACAAAGGAGAGTTACAGTTACCTAACAGTTTTGTGAATAATGAGTTTAGGAATCTGACTTTTAAATCTCCCGTTAATAGTCACCTCTTTAATACCAAATCCAATGCTTCATTTTCTcctaaattttcaagtttcgGTTACCGGAATGCACTTTCCTTTGCCTCAATGAATATCCTCGGCCATCGATCGTATTCATCATCACTGGGTGGCAAAGGAAGTAGGGATGGGAACACAGAAGTTCCTGCTGGTTCTAGTGCTGACATGAGTGCAAGCAATGATTGGATTGATAAGGTTAAGGACATTTGGCACAATGCCGTGGAGACAGCAACATATGCTGGGCAAAAGGTTAAAGAAACCTCCGATGAGATGACTCCTCATGTGGAACAGTTGCTTGAGTCGCATCCTTACCTTAACAATGTGGTAATTCCAGTTGCTGGCCTGGTAACTTCTACTATAATAGCTTGGATTGTGATGCCCCGGATTTTGAGGAAATTTCACAAATATACAATGCAAGGTCCTACCGTCCTTACTGGAAGCATGTTTGGGGCGCAAGTTCCATATGAGAAAAGCTTTTGGGGTGCTTTGGAGGCTCCAGTGCGATATTTAGTTACCTTCGTGGCATTCTCACAAATTGGTTTCATGGTAGCTCCAACTACTATAACCTCACAATACCTGGTACCAGCATGGAGGGGTGCATTGATTGTTTCATTTGTATGGTTTTTGCATCGATGGAAAGCAAATGTTTTTGAACGAATATACTCCAGTCAGCGTTTACTTGGGGTTGATCGGGAAAAAATGCTTGCCCTTGACAAAATCTCGTCTGTTGGCCTATTTATGACTGGTATAATGGCTTTAGCAGAGGCTTGTGGTGTAGCTGTGCAATCTATTGTAACTGTTGGTGGCATAGGAGGAGTGGCTACTGCTTTTGCTGCGAGAGATATCCTTGGCAATGTGTTCAGTGGTTTATCTATGCAATTTTCAGGGCCTTTTTCTGTTGGAGATACAATTAAAGCTGGCTCAATAGAGGGTCAAGTGGTGGAAATGGGACTTACTGCCACATCCTTGCTGAATGCAGAGAAGTTTCCAGTTATAGTGCCGAACTCATTCTTTTCAAGCCAGGCTATTGTGAATAAGTCCCGTGCTGTGTGTCGAGCAATCATCTCCAAAATCCCTTTGCAGATTGCGGATTTGAATAAGATTCCACAAATATCAGAAGATATCAAGAACATGTTGCAGTCTAACGCAAAGGTTTTCTTAGAAAGAGAAGTTCCATATTGTTTCTTGTCACGCATCGAAAGTAAATGTGCAGAATTGACTATTGGATACAACCTCAAACATATGcGCAAAGATGAGTTGTATTCTGCAGAACAAGAGATTCTCTTACAGGCAGTCCAGATTATTCAGAAACACGGTGCTGTACTCGGAAGGACTTGGCAAGATTTTACAATTGATAGTGACAATTA 1625 0.4092 MTAVMSSFLKCLRGSINGSFNLGLIQSSHRDIKFARYANHFRVRLTSDSRDCVYYKGELQLPNSFVNNEFRNLTFKSPVNSHLFNTKSNASFSPKFSSFGYRNALSFASMNILGHRSYSSSLGGKGSRDGNTEVPAGSSADMSASNDWIDKVKDIWHNAVETATYAGQKVKETSDEMTPHVEQLLESHPYLNNVVIPVAGLVTSTIIAWIVMPRILRKFHKYTMQGPTVLTGSMFGAQVPYEKSFWGALEAPVRYLVTFVAFSQIGFMVAPTTITSQYLVPAWRGALIVSFVWFLHRWKANVFERIYSSQRLLGVDREKMLALDKISSVGLFMTGIMALAEACGVAVQSIVTVGGIGGVATAFAARDILGNVFSGLSMQFSGPFSVGDTIKAGSIEGQVVEMGLTATSLLNAEKFPVIVPNSFFSSQAIVNKSRAVCRAIISKIPLQIADLNKIPQISEDIKNMLQSNAKVFLEREVPYCFLSRIESKCAELTIGYNLKHMRKDELYSAEQEILLQAVQIIQKHGAVLGRTWQDFTIDSDN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00710 541 Gene3D - 383 431 IPR023408 -
Bva04g00710 541 Pfam Mechanosensitive ion channel 325 526 IPR006685 GO:0016020|GO:0055085
Bva04g00710 541 MobiDBLite consensus disorder prediction 120 141 - -
Bva04g00710 541 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 281 366 IPR011014 GO:0016020
Bva04g00710 541 Gene3D - 281 381 - -
Bva04g00710 541 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 85 534 - -
Bva04g00710 541 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 85 534 - -
Bva04g00710 541 SUPERFAMILY Sm-like ribonucleoproteins 367 432 IPR010920 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00710 111 537 Mechanosensitive Ion Channel Family AT4G00290 61.949 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00710 K22047 - gmx:100789047 692.189