Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00709 ATGGATTTAGAGTACTTCGACCTCGACGATGCTCTCGCCGTCGCCGAGGAATCACGTCGTCGATTCGCCGCATCCAAGttctttgtctcaaacttgcCGGCGGCTTCTGTTCATGACAAGGACGACGATGTTTGCTCTGTTTGCATGGAAGGTTTTGTCGATAACCTTTCCGCCGACTCTCAGGGAAACAAACGAGTGCCGTGTGGACACGTGTACCACGCAACCTGCATCATTGCGTGGCTCTCTCACCGCAGCTCTTGCCCTCTGTGCCGATCTGAAATCTCCGTCGACCACTCTAATTA 302 0.5066 MDLEYFDLDDALAVAEESRRRFAASKFFVSNLPAASVHDKDDDVCSVCMEGFVDNLSADSQGNKRVPCGHVYHATCIIAWLSHRSSCPLCRSEISVDHSN 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00709 100 SMART ring_2 45 90 IPR001841 -
Bva04g00709 100 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 5 95 - -
Bva04g00709 100 ProSiteProfiles Zinc finger RING-type profile. 45 91 IPR001841 -
Bva04g00709 100 Pfam Ring finger domain 44 91 IPR001841 -
Bva04g00709 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 96 IPR013083 -
Bva04g00709 100 SUPERFAMILY RING/U-box 36 97 - -
Bva04g00709 100 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 5 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00709 Bva-Chr4 4672072 4672738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00709 1 97 C3H Transcription Factor Family AT5G01980 42.157 5.68e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00709 - K22378 gmx:102669154 112.849