Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00686 ATGGGAAAGAGCTGGATTCTGGGTTTTTTTCTCCCCTTCCTCCTCCGCCATTTGACTGCAGCAGTATCTGCCATTGGTGTCGGCGGGGGTGTTGGAGTTGGGGTTGGTATTGGTGTTGGCAATggcggtggtggtggtggttcGGTTTGGGTTGGCGGCGGCATCAACGGCCCGGAGCCACCGGGATCTTCAGTGCCAGGGCTGGACAGAGCTTACGCGGCTCTGCAGGCTTGGAAATCTGCAATCACTGATGACCCATTAAGGATTTCAGATAGTTGGAATGGTTCTAATGTGTGTTCTTACAAAGGAGTGTTCTGTGGAGATGCTCAAGATTCAACTGGTCCTTTTGTTGCCGGAATTGATCTCAACCATGCAAATCTCCGAGGAACTCTTGTCAAGGAGCTATCTTTACTCACAGAAATGTCTCTTCTTCACCTCAACAGCAATAGATTCTCGGGCCCAATTCCTGATTCATTAAGAGACCTCTCTTCTCTGGAAGAGTTGGACCTCAGCAACAACCAGTTTTCAGGTTCTTTTCCAATGGTTACTCTTGACATGCCAAGTCTCATTTACTTAGACCTCAGATTCAACTCTTTCTCTGGGGCACTCCCTGAAGACCTTTTCAACAAGAAACTGGATGCAATATTCCTCAACAACAACCAATTCTCAGGTGAAATTCCAGAAAATTTGGGTAATTCCCCAGCTTCCGTCATCAATTTAGCCAACAACAAGCTCAGTGGAAACATCCCTTTTAGTTTTGGCTTCATGGGTTCTAAACTAAAGGAGATTCTTTTCCTCAATAACCAGTTAACAGGCTGCATTCCTGAAGGCGTGGGCATCTTCACAGAGATGCAAGTTCTGGATGTTAGCTCAAATTCATTCATGGGTCATTTACCAGACACATTATCTTGTCTGCAAGATATAGAAGTTCTCAACTTGGCACACAACAAGCTTTCTGGGGAATTACCAGAAGTTCTCTGCTCTCTGAGAAGCCTGATGAATCTAAGTGTTGAGTACAACTTCTTTTCTGGGTTCAGCCAAGAGTGCTCAAGGCTTTTGGTTAGAAATGTGGGTTTTGATTTCTCACTTAACTGCATTCCGGGGAGGGACATGCAGAGGCCTCACCCAGAATGCTCTGTAATCCCAGGTGGTAGCTTAAATTGTCTGAGAATCCCAACTCCAAAGCCTCTTGTTTGTGGCTCATTGGGAGTAATCAGTAGCAGCAATAGGAAAATCAAACCCAGTTCTTCTTCCCCTTG 1259 0.448 MGKSWILGFFLPFLLRHLTAAVSAIGVGGGVGVGVGIGVGNGGGGGGSVWVGGGINGPEPPGSSVPGLDRAYAALQAWKSAITDDPLRISDSWNGSNVCSYKGVFCGDAQDSTGPFVAGIDLNHANLRGTLVKELSLLTEMSLLHLNSNRFSGPIPDSLRDLSSLEELDLSNNQFSGSFPMVTLDMPSLIYLDLRFNSFSGALPEDLFNKKLDAIFLNNNQFSGEIPENLGNSPASVINLANNKLSGNIPFSFGFMGSKLKEILFLNNQLTGCIPEGVGIFTEMQVLDVSSNSFMGHLPDTLSCLQDIEVLNLAHNKLSGELPEVLCSLRSLMNLSVEYNFFSGFSQECSRLLVRNVGFDFSLNCIPGRDMQRPHPECSVIPGGSLNCLRIPTPKPLVCGSLGVISSSNRKIKPSSSSP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00686 419 PANTHER LRR/EXTENSIN 3 419 - -
Bva04g00686 419 PRINTS Leucine-rich repeat signature 165 178 - -
Bva04g00686 419 PRINTS Leucine-rich repeat signature 305 318 - -
Bva04g00686 419 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 419 - -
Bva04g00686 419 SMART LRR_typ_2 305 329 IPR003591 -
Bva04g00686 419 SMART LRR_typ_2 162 185 IPR003591 -
Bva04g00686 419 SMART LRR_typ_2 186 210 IPR003591 -
Bva04g00686 419 Pfam Leucine rich repeat N-terminal domain 71 106 IPR013210 -
Bva04g00686 419 Gene3D Ribonuclease Inhibitor 69 232 IPR032675 -
Bva04g00686 419 SUPERFAMILY L domain-like 72 351 - -
Bva04g00686 419 Gene3D Ribonuclease Inhibitor 233 352 IPR032675 -
Bva04g00686 419 Pfam Leucine rich repeat 142 198 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00686 Bva-Chr4 4552956 4554638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00686 66 390 Leucine-rich Repeat extension Gene Families AT3G24480 49.699 3.13e-101 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00686 - - qsu:112008913 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00686 04 4552956 4554638 Bva04g00686 04 4552956 4554638 ECH