Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00685 ATGAAGATCGAGGAATTGGACGATGTGGAGTCTAGTCCGGACGAACGGAATCATGGTAAGGAGATTGTGAGGGTTGACGCAAAGAGGGCATTAGTTGGAGCAGGTGCCCGGATTCTGTTTTACCCGACACTTCTGTATAATGTGCTTCGAAATAAGATGGAATCTGAGTTCAGGTGGTGGGACGAAGTCGATGAGTATTTATTGCTGGGTGCTGTTCCATTCCCTAAAGACGTTCCACGTTTGAAGAAACTTGGTGTGGGTGGTGTAATTACTCTGAATGAACCTTATGAAACTTTAGTGCGATCGTCATTATATTATGCTCATGGAATTGATCATTTAGTGATTCCTACTAGAGATTACCTGTTTGCCCCTTCATTTCTGGATATCAGCCGGGCAGTTCAATTTATTCATAAGAATGCAAGTTGTGGCAAAACTACTTATGTTCATTGTAAAGCTGGACGGGGAAGGAGTACAACAATTGTGCTTTGTTATTTGGTTGAATACAAGCACATGACACCTGCGGCGGCCTTGGAGTATGTGAGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCTCAGTGGAAGGCTGTTCAAGAGTACAGCAAACTCCGACCTTCTCCAACATCATACTCCCCCTCCAGAGATGCAGTTCTTATAACCAAAGCTGATCTTGAGGGATACCATAGTACATATGATGCTGGTATGGAGCTGGCCATTGTTCCCAAAGTgccgaaaagaaaaactaaaccCATGATTGCAAGATTATCTTGCCTGTTTACATCATTGAAAGTTTCTGGTAATGTTATACCAGTAAATAGGCGGCTGCCAGTTCCTGAAGCACGTGCTTGTTA 851 0.4277 MKIEELDDVESSPDERNHGKEIVRVDAKRALVGAGARILFYPTLLYNVLRNKMESEFRWWDEVDEYLLLGAVPFPKDVPRLKKLGVGGVITLNEPYETLVRSSLYYAHGIDHLVIPTRDYLFAPSFLDISRAVQFIHKNASCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQEYSKLRPSPTSYSPSRDAVLITKADLEGYHSTYDAGMELAIVPKVPKRKTKPMIARLSCLFTSLKVSGNVIPVNRRLPVPEARAC 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00685 283 Gene3D Protein tyrosine phosphatase superfamily 59 204 IPR029021 -
Bva04g00685 283 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Bva04g00685 283 PANTHER - 1 283 - -
Bva04g00685 283 Pfam Dual specificity phosphatase, catalytic domain 99 201 IPR000340 GO:0008138|GO:0016311
Bva04g00685 283 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Bva04g00685 283 PANTHER OS01G0739200 PROTEIN 1 283 - -
Bva04g00685 283 CDD PTPMT1 59 202 IPR044596 GO:0004721
Bva04g00685 283 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Bva04g00685 283 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 202 IPR029021 -
Bva04g00685 283 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00685 Bva-Chr4 4546530 4549115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00685 21 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.965 2.55e-99 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00685 - - gmx:100817410 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00685 04 4546530 4549115 Bva04g00685 04 4546530 4549115 ECH