Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00684 ATGAATAAGATGAGCAATTTGAGCTCTGTGAGCAGCTCTGATCTCATAGATGCAAAGCTGGAAGAGCATCAGTTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGTCTGCCAGCAGGTGTGAAGTTTGATCCAACTGACCAAGAACTAATAGAACACCTGGAAGCCAAAGTAGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAATTCATCCTTACTATTGAAGGAGAAGATGGGATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACGAGAGATGGCTTAAGCAGGCACTTCTTCCATAGACCTTCCAAAGCCTACACAACTGGgacaagaaagagaagaaaaattcaaaacgaATGTGACTTGCAAGGTGGGGAAACCCGATGGCATAAAACTGGTAAGACCAGGCCTGTCATGGTgaatggaaaacaaaaagggtGCAAGAAAATTCTAGTCCTCTACACCAATTTTGGGAAGAACAAAAAACCCGAGAAGACCAACTGGGTCATGCACCAGTACCATCTTGGGCAGGAtgaagaggagaaagaaggaGAGCTGGTTGTGTCAAAGATATTCTATCAGACACAACCAAGGCAATGCAATTGGTCTGATAGAAGTGCCACCACTGGTGAAGGAAGTGGGGAACCTAACAGCAGAAGAGACAGTGGAAGTGGAAGTTGCTCTTCTAAGGAAATAGTTACTCACAGAGATGAGATGTCTACAGTTGGTGTTCCTCCAATATCAAGTTACACAGCCATGGATATTCATCAACAGCTAAAATCTGCAGAACATTTTAGCTTCGTCCCATTCAGAAAAAGCTTCGATGAGGTGGGAGTAGGAGAGGCTTCTACAGCTAGAGATCAAATGCAAGCATCAGGTTCATGTGCAGATGCACATGAGAGGCAGCGAACACATCATCAAGTTGTTCATcaacagcaacagcaacatCATCAGATTGCAACTGCAGCCTTCCATATCAGTAGGCCTTCACATCCAATCTCTACTATTATCTCTCCACCTCCTCTTCACCAAACCTCCATCATCCTCGACGATAGCCCTTACCATCATGTCTCTAGAATAATgctgcaaaatgaaaatttccagcaacagcagcagcagcatcaTAAACTTGGAGCAAGGTCTGCGTCTGGGTTGGAGGAACTCATCATGGGCTGCACTTCAACTGATATTAAAGAGGAATCATCCATTACAAATCCGCAAGAAGCTGAGTGGTTGAAGTACTCTACTTACTGGCCTGATCCTGACAACCCGGATAATCATCATCATGGATA 1334 0.4085 MNKMSNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNKKPEKTNWVMHQYHLGQDEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNSRRDSGSGSCSSKEIVTHRDEMSTVGVPPISSYTAMDIHQQLKSAEHFSFVPFRKSFDEVGVGEASTARDQMQASGSCADAHERQRTHHQVVHQQQQQHHQIATAAFHISRPSHPISTIISPPPLHQTSIILDDSPYHHVSRIMLQNENFQQQQQQHHKLGARSASGLEELIMGCTSTDIKEESSITNPQEAEWLKYSTYWPDPDNPDNHHHG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00684 444 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 2 425 - -
Bva04g00684 444 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Bva04g00684 444 MobiDBLite consensus disorder prediction 216 252 - -
Bva04g00684 444 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Bva04g00684 444 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 425 IPR044799 GO:0003700
Bva04g00684 444 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Bva04g00684 444 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Bva04g00684 444 MobiDBLite consensus disorder prediction 216 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00684 Bva-Chr4 4538151 4542965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00684 11 439 NAC Transcription Factor Family AT5G56620 53.187 5.25e-140 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva04g00684 NAM 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00684 - - gmx:100795246 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00684 04 4538151 4542965 Bva04g00684 04 4538151 4542965 ECH