Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00679 ATGATGCTCGGAGAACCTCATCGTCCGAATCCAACGGTCCACGTTCCTCCGTGGTCGGTGCTGGATGATCAGACCCCAGAGATGTACTCCCCTTACCCTGTCAGCGGTGTCTCTGTTCACTCCGATGGTAATGCCAATGGTGGTGATTATTCTCCCTGTTACCTGCAAGAAGCACTGACCTCGCTTCAGCGTTACCTGCCGTCGAACGATGCGGACGGGGACTCGGATTCCGAGGTGATGGGTCGCGATTCAGATGCTCCGGTGGATGCCTACTCCTGCGACCATTTTCGGATGTTCGAGTTTAAAGTGAGGAGGTGCGCACGGGGCAGGTCACATGACTGGACCGAGTGTCCTTATGCTCATCCCGGCGAGAAGGCTCGCCGGAGGGACCCGAGGAAGTATCACTATTCTGGTACTGCATGCCCTGATTTTCGCAAGGGAAATTGCAACAAAGGGGATGCATGTGAGTTCGCTCACGGGGTGTTTGAGTGTTGGCTTCACCCAGCTCGTTATCGTACACAGCCATGCAAGGATGGGACTAGTTGCCGGAGAAGGGTGTGTTTCTTTGCTCACACGCCGGAGCAACTGCGAGTACTGCCTCAGCAGAGCCCACGGAGTGTTAACTCTGCAGATTCTTATGATGGGTCTCCTCTGAGGCAGGCGATTGAGTCTTCTTGTGTGAAAACGCTGCCTTTCTTGTCCTCTCCCGGCTCGATTTCCCCACCATCGTCACCTCCGTTGGAGTCGCCTCCTATGTCGCCGATGACACAATCTATGAGCCGCTCTCTGGGTTCGAGCTCCGTCAATGAGATGGTGGCTTCTCTGCGTAGTTTGCAGCTTGGTAAGGTCAAATCATTGCCCTCCTCCTGGAATGTTCAACTGGGTTCAACCTGCTTCCGATCTCCCAGAGGATCGGTGCTCCGACGCGGATTCTGCAGCCTCCCATCTACCCCTACTCAGGTTCCTACTCGTTCTAGCACTAACTGCTTCGACATATGGGAGGAGAGTTGTGAGGAGGAGCCTGCGATGGAGAGAGTGGAGTCTGGAAGAGATATCCGTGCTAAGATGTTCGAGAAATTGAGCAAGGAGAACTCTATGGATCGATCCGACCCGAATCGTGGTCCGGATGTTGGGTGGGTCTCGGAGCTGTTGAAATG 1157 0.5454 MMLGEPHRPNPTVHVPPWSVLDDQTPEMYSPYPVSGVSVHSDGNANGGDYSPCYLQEALTSLQRYLPSNDADGDSDSEVMGRDSDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCNKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSVNSADSYDGSPLRQAIESSCVKTLPFLSSPGSISPPSSPPLESPPMSPMTQSMSRSLGSSSVNEMVASLRSLQLGKVKSLPSSWNVQLGSTCFRSPRGSVLRRGFCSLPSTPTQVPTRSSTNCFDIWEESCEEEPAMERVESGRDIRAKMFEKLSKENSMDRSDPNRGPDVGWVSELLK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00679 385 PANTHER UNKEMPT FAMILY MEMBER 7 384 IPR045234 -
Bva04g00679 385 Gene3D - 135 199 - -
Bva04g00679 385 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 160 IPR000571 GO:0046872
Bva04g00679 385 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Bva04g00679 385 MobiDBLite consensus disorder prediction 238 252 - -
Bva04g00679 385 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Bva04g00679 385 SMART c3hfinal6 135 161 IPR000571 GO:0046872
Bva04g00679 385 MobiDBLite consensus disorder prediction 361 385 - -
Bva04g00679 385 MobiDBLite consensus disorder prediction 234 262 - -
Bva04g00679 385 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00679 Bva-Chr4 4504307 4505899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00679 85 199 C2H2 Transcription Factor Family AT5G12850 68.696 1.57e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva04g00679 zf-CCCH 1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00679 - - jre:109010264 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00679 04 4504307 4505899 Bva04g00679 04 4504307 4505899 ECH