Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00653 ATGAGGGTGCCACCAGAAAGCATGTATCATAAGTGGTTGTTTGACCATACCCATGTGAAGATTTCATGGATTCATCATCAAATCCATCAAAAAGATGGATACTTGAGCTATCCGCCTCCGATTTTGCCTTCACCTTCACCCCCTTATACTGGTGCTTTCCACAAAGAATCAATGTCCTCGTCATCATCACCTTCATCATCTGGTACTAGGATTAGTCCTGCTGTTCTTTTCGTTATAGTGATCATAGCTgtactttttttcatttctggtCTGCTCCATCTGCTTGTTAGATTTCTCATAAAGCACCCATCATCCTCAGCATCTACTCAATCTAATAGACACCACGAAGTTTCTACCTCTGATGCTCTTGAAAGACAGCTTCAACAACTTTTTCATCTGCATGACTCGGGCCTAGATCAAGCATTCATTGATGCACTCCCTGTTTTCCAGTATAAAGAGATAGTTGGTCCAAAAGAGCCATTTGACTGTGCTGTTTGCCTGTGCGAATTTTCTGAGAGGGACAAGCTTAGATTGCTTCCTGTGTGCAGCCATGCTTTTCATATAGATTGTATAGACACTTGGCTTCTGTCTAATTCAACATGCCCGCTTTGCAGAGGGACCCTTTTTGCTCAAGGCTTTTCAATGGAAAACCCaatgtttgattttgatgattttagggAAGAAGGTGGGTTCCCTTGTAATGTTGAAAATCGATTCACTTCCAGACAAAAAACtgttgaaattgaagaaacGGTAGAGAAAGGGGTTTTCCCAGTGAGACTTGGTAAGTTTAGAAGGCTAAATCTGGAGGAAGGAGAGGTTGCAGGAGGAGAGACTAGTAGCAGTACTTTAGATGCAAGAAGATGCTACTCAATGGGATCTTATCAATATGTTCTTGACAACTCTGACCTTCGAATTTCCTTGAACCATGATACTAAGCTCACCAAAGGAAGAGAAGACGCTGAGAAACTTTCAATTGAAGGGGATATAGAAGCAAAGAAGATTAGCAATGTGAATAAAGACTTGCCATGGATGGGGAAAAGAGAAGGAACATG 1055 0.3962 MRVPPESMYHKWLFDHTHVKISWIHHQIHQKDGYLSYPPPILPSPSPPYTGAFHKESMSSSSSPSSSGTRISPAVLFVIVIIAVLFFISGLLHLLVRFLIKHPSSSASTQSNRHHEVSTSDALERQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGPKEPFDCAVCLCEFSERDKLRLLPVCSHAFHIDCIDTWLLSNSTCPLCRGTLFAQGFSMENPMFDFDDFREEGGFPCNVENRFTSRQKTVEIEETVEKGVFPVRLGKFRRLNLEEGEVAGGETSSSTLDARRCYSMGSYQYVLDNSDLRISLNHDTKLTKGREDAEKLSIEGDIEAKKISNVNKDLPWMGKREGT 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00653 351 Pfam Ring finger domain 162 205 IPR001841 -
Bva04g00653 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 24 339 - -
Bva04g00653 351 CDD RING-H2_PA-TM-RING 162 205 - -
Bva04g00653 351 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 24 339 - -
Bva04g00653 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 211 IPR013083 -
Bva04g00653 351 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Bva04g00653 351 SUPERFAMILY RING/U-box 142 211 - -
Bva04g00653 351 SMART ring_2 163 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00653 Bva-Chr4 4357780 4359898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00653 60 300 C3H Transcription Factor Family AT2G18650 43.911 4.37e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00653 - - qsu:112013252 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00653 04 4357780 4359898 Bva04g00653 04 4357780 4359898 ECH
Bva08g01299 08 6783291 6785265 Bva04g00653 04 4357780 4359898 ECH
Bva11g01110 11 12381606 12383975 Bva04g00653 04 4357780 4359898 ECH