Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00649 ATGTATAGAATAATATCCAAGCCGGCCTCTAAATTCCGCTCCCAAGCCACCACCGACGAGGAAAACGCCAACCACATTTTATGGCGTTACCAAATCCTCGACCCAGACAGCGACATTGTTGCGAAATGGAACGTGGTATTCCTCGTTACCAGTCTCCTTGCGCTTTTCGTGGACCCTCTTTATTTCTACCTACCCTATGTCGGAGGCCCGGCTTGCTTGGACACAGATACCTCATTGAGCGTCGTGGTCACTTTCCTTCGCACCGTGTCAGACCTTTTTTACCTTCTCCACATGCTCATGAAGTTTCGGACCGCCTTTGTCTCCCCGAGTTCTAGAGTGTTTGGCCGCGGTGAGTTGGTTATGGATCCCCGAGAAATTGCCATGCGGTATTTGAAGACAGATTTTGTCATTGATCTCGCTGCAACGCTTCCACTGCCACAGATGGTTATTTGGTTAGTGATTCCGGCAGCAAAAAGCTCGAGAGGTGATCATGCCAACAGCACTCTTGCTCTTTTCGTTCTTATTCAGTATATTCCTAGATTGTTTCTTATCTTCCCTTTGAACCGGCGTCTTTTAAAATCCTCGGACGTTCTTACCAAGACTCCCTGGGCAGGAGCTTTTTACAATCTGTTTCTCTACATGCTAGCTAGTCATGTTATCGGAGCTTCATGGTATCTGGCCTCAATAGGGCGACAATTTTCCTGCTGGAAATCTCAGTGcagaaaggaaaattcaaaTCTCATGGCTTGCCTTCCTAGTTTTCTTGGTTGTAATAGTTTGACGTTACCTGATAGGATGTACTGGCTAAATATCACCCAAGTTGTTACCAAATGTGATGCAAAGAACGAGGACAAATTTAAGTTTGGGATATTTGCGGATGCTTTTGTTAATGACGTAGCATCTCCAAAATTTACGGAAAGATACTTATATTGTCTTTGGTGGGGTTTAAGAAATCTAAGTTCATATGGACAGAGTTTGGACACCACCACCTACCTTGGTGAGACAATCTTTTGCATTTTCCTCTGCATTGTTGGATTAATTCTCTTTTCACTACTGATCGGCAACATGCAGACATATATTACGTCAATGTCGATAAGAATTGAAGAATTGAGGGTAAAAAAAAGGGACACTGAGGAGTGGATGAGACATAGGCAGTTACCTCCAGAATTGCAGAATCGTGTCCGTCGCTTTGTTCAATATAAATGGCTTGCCACAAGAGGAGTTGACGAAGAATCCATATTGGAGATATTACCGTTAGATCTTCGTCGTGAAATTCAACGCCACTTATGTCTTTCTCTTGTTCGCCGTGTCCCCTTCTTCTCACAAATGGATGATCAGCTTCTTGATGCCATTTGTGGATGCCTTAAGTCATCATTGAACACAGAAGGAACCTACATTTTTCGGGAGGGTGATCCAGTAGATGAAATGGTATTTGTCATTAGAGGGCAACTGGAAAGCTCTACAACTGATGGAGGAAGGCAGAGGATCTG 1490 0.4362 MYRIISKPASKFRSQATTDEENANHILWRYQILDPDSDIVAKWNVVFLVTSLLALFVDPLYFYLPYVGGPACLDTDTSLSVVVTFLRTVSDLFYLLHMLMKFRTAFVSPSSRVFGRGELVMDPREIAMRYLKTDFVIDLAATLPLPQMVIWLVIPAAKSSRGDHANSTLALFVLIQYIPRLFLIFPLNRRLLKSSDVLTKTPWAGAFYNLFLYMLASHVIGASWYLASIGRQFSCWKSQCRKENSNLMACLPSFLGCNSLTLPDRMYWLNITQVVTKCDAKNEDKFKFGIFADAFVNDVASPKFTERYLYCLWWGLRNLSSYGQSLDTTTYLGETIFCIFLCIVGLILFSLLIGNMQTYITSMSIRIEELRVKKRDTEEWMRHRQLPPELQNRVRRFVQYKWLATRGVDEESILEILPLDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLKSSLNTEGTYIFREGDPVDEMVFVIRGQLESSTTDGGRQRI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00649 496 CDD CAP_ED 439 496 IPR000595 -
Bva04g00649 496 Gene3D - 45 362 - -
Bva04g00649 496 SUPERFAMILY Voltage-gated potassium channels 34 361 - -
Bva04g00649 496 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 20 494 - -
Bva04g00649 496 Pfam Ion transport protein 43 363 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bva04g00649 496 Gene3D Helix hairpin bin 363 430 - -
Bva04g00649 496 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 20 494 - -
Bva04g00649 496 ProSiteProfiles cAMP/cGMP binding motif profile. 439 496 IPR000595 -
Bva04g00649 496 SUPERFAMILY cAMP-binding domain-like 369 491 IPR018490 -
Bva04g00649 496 Gene3D Jelly Rolls 437 496 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00649 Bva-Chr4 4331499 4335662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00649 26 493 Ion Channels AT5G14870 73.617 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00649 K05391 - gmx:100802812 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00649 04 4331499 4335662 Bva04g00649 04 4331499 4335662 ECH