Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00646 ATGATGAATAAGAGAATTCTGGGTTTTGCAACACAGGTTGCGATAATGGCAATTGTGGGATCTGTGATACTATTATTTGTGGGAATTGGATTCATGGTATTGCTTCATGTCTGCATAATTGGGGGAGGCTCTAGAAGAAGAGGAGCTGGTGGGGGCAGATCAACGGAGGATAGGGGTGAAAATGGAAGCACAGGCATGTCAAAAGTTGAGATAGAGAAGCTTCCTTGCTATGATTATAAAGGCGAAGACAGTTCAAGTGGCCCTGAGGATTGTGCAGTTTGCTTGGAGAACCTTGCAACTGGGGATGAGTGCAGATTGTTGCCTATTTGCAAGCATAGTTTTCATGCCCAATGTGTGGATACATGGCTTTTGAAGACACCCTTTTGCCCAATTTGCAGAACCAGGGTTGGTTCTATTAGAGATGAAAATGATCACGAGACAACAACTGATGAGATCAGAGTTCAGTTGGAACAACGGCCAGACAGTGATATGTCTAGAGATTTTAGCTTAGCCCCTTTAAGTTA 524 0.4351 MMNKRILGFATQVAIMAIVGSVILLFVGIGFMVLLHVCIIGGGSRRRGAGGGRSTEDRGENGSTGMSKVEIEKLPCYDYKGEDSSSGPEDCAVCLENLATGDECRLLPICKHSFHAQCVDTWLLKTPFCPICRTRVGSIRDENDHETTTDEIRVQLEQRPDSDMSRDFSLAPLS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00646 174 MobiDBLite consensus disorder prediction 44 65 - -
Bva04g00646 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 143 IPR013083 -
Bva04g00646 174 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 15 142 - -
Bva04g00646 174 SMART ring_2 91 132 IPR001841 -
Bva04g00646 174 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Bva04g00646 174 Pfam Ring finger domain 90 133 IPR001841 -
Bva04g00646 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 15 142 - -
Bva04g00646 174 SUPERFAMILY RING/U-box 70 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00646 Bva-Chr4 4324498 4325087 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00646 39 174 C3H Transcription Factor Family AT1G53820 33.333 5.35e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00646 - K15692 pvy:116114873 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00646 04 4324498 4325087 Bva04g00646 04 4324498 4325087 ECH