Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00643 ATGGAACTCAACGATTCCGGCGACGAACTCAGAGACTCCAAGAACCCTCAAGATTCTCGCTCCGGACTTGGAATCGACCTGAATGAGATCCCTTCTCCTTCCTTTGTTGAAACCCTACCGGACTCCATCGACGTTGTACGGACTTACCACGAGAACCCGGCGCCTCCGCCCGGTGGTCCTGCCGGGATTCCCGGCGATGTTCGGGGCTCCGCTTGTGCTTCCTGTGGTAAGCCTGAGGTGCGGGGTCATGTTGTTGTCTGTGATGGCTGCGAGCGCGGCTTCCATTTGGGCTGCGCGGGAATGCGGAGCCGCCAAGCTGTGAAATTTGACGAATGGGTTTGTGGAGAGTGTGTCTCCAGTGGGGTGAAGAGTAAGCGCTGGCCATTGGGAGTTAAGTCCAAGCAGCTCTTGGATATTAATGCTTCGCCTCCCAGCGATGTTGACGGCGAGGGTACTGAGGAAATGCAGGATTTGAGaaAGCACACTCTGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCCCAGTGACAtactcaaacttcttcaatggGAGTGCATTTGGCTTCCAAAAAGCATCAGGACTTGTGACTGATGCTGTCAGAGTGGGTTTTGATGATATATTGAATCATACCCAATCAATGGCTAGAAGTTTCAAGGAGCTAGATGTGGATTTTCCTGTTGGAAAGCATAGGAATAGTAATAATACAGCCATCAGACTACCATCACGGAGTCCAAATGAGATATTCTTGCAGGCTCTTAGAGATTTTATATCTGAAAGGCGAGGTGTACTTGAGGAAGGTTGGCGAGTGGAATTCAGACAATCAATGAGTAGCTCTGAACTGTATGCAGTTTATTGTGCTCCAGATGGAAAAATCTTTGATTCTGTATATGAAGTTGCTTGTTACCTTGGATTGATGTCTAGTTACAATTGTATGGAATCTGATATAAGAAATGAGAGGCCTCCTTCTACATTAGATGGCTCTCATTtatccagaaaaagaaagtcagCAAGAGCTCCAACTGTAAATGGTTTTGCTGAAAATAAGGGAAACTTCATGAGTTATAATCATAAGGATCCTTCTTCTGATGGTGCACATGTAGAGTGTGCTAATACATGTGGGAATATCTCAAAAGCCCAAAAAATTGGAAGAGAAGATGATGCTCACTCTTGCCCTCATCCATGTGCTgatGGACTTCCATTGCAATTTGAagatttctttgttctttctctGGGAAAAGTTGATGTTAGACCTACATATTATGATGTTAACCTGATTTGGCCCATAGGTTATAGATCTTGTTGGCATGATAAGATTACTGGCTCCCTCTTTACATTTGAAGTTTTGGAGGGTGGTGACTCTGGACCTGTATTTAGGATTAGAAGGCGTTCTTGTTCTGAATTTCCTGTCCCTGTTGGGTCAGTTCTTCTCTCAATATCAAACCTTAGTCATTTTGTTAGTCAAACATCCGAAGGTGAGAGAAAGAGTTATGATAATTTGGATTGGGATGATGAAGGAAGTATTCAGATGATTTTTTCTGACCCTTGTACGCCAACAGAAAATGATGTCTTAAGTTGTCTTGCAAGTTGCTCCGGTGACTCATATGATGCTCTTGCATCAGACACATTGCAGCCTATGGCTAATCATACATCAGATGGATTGGGATTGATTGATGAAATTGGTGAAATTTTAGTGGAAGAGCGTTCATCATCTTTGGCATGGAGAAATATTTCTCagaaattaattgatgttTGCACTGAAATCTGTAACCAGAAAGGGACCCTCAAGTTCTACTGCAATCAtactgaaaatgaaacagaTTTCCATAAATTGGACAAGAAGGGTGGCAAGAATGAAATACACTCTACTCCACTGTCTAGATTCTGTGGTTTACCTGGTTCTGTTAGCATCCCAGTTATAATTGAGGCTAACAATGAAGCAAACAGTCTACATGAGGTCTTAGGAAATTGGTTGGAGCAGGATAGATTTGGACTAGATGTGGAATTTGTGCAAGAGATAATAGAACAGCTTCCTGAGGTCCAATGCTGTTCACAGTATCAATTTCTCAATAATAGAAGTAATTGCTCTTCATTTTTAACAGTTGGAAATGGGTTCCTAGTGGTTGAATGGAGAGGTGGATCACAGTataaggaagaagaagtagTACAAAGTTTATATAGGAGGCCCAAGAAAGCAAGAATGGCTGAAGGGTGTTTCAAGGAAGAGCGTTGTCCTCCTCCTGGGAAAGTACTATGCTCAACAGTTGCCTGTGAACTTGTCGGTGATGTTTTTCAGGCTTGGGAGCTATTAGGGCGATTCCATGAAATTCTGGGCCTGAAAGAACCTTTGTCATTGGATGAGTTGGAGAGGGAACTCGTCAACCCATGGTATGATGGATCTGATTTTCTTGAGAAATCTGAGAAGGAAGCTGAGGGCAGTCAAGATATAAGTTCACATAAAGTTGACGGTACAGATGGACCTATCTTGTCCTCAAGCTGCAATGCTGGTCCTTCAGGTTCCTGGGAAAGTCCCCATGTGTTCATTCAAGTTGAAACAGAAGCAGCAAAAGAGGCAGCTCAAGTTAAGCTCGCATCTTTCACTTATGCTAGATGCTTTGGTGTAGCTTTGACTAAGGCTCATAATTCATTACTAGGAGTTCTAATAGGCGAACTGCAGTCCAAGGTTGCTGCTCTGGTGGATCCAAATTTTGATCCAGGagagacaaaaacaaaacggGGAAGAAGGAAAGATGTTGATAATGCAAACCCTTCAAAAAGAACCAAGCTCAATATGTTTCCCATTAATGAGTTGACATGGCCAGAAGTAGCACGTAGGTACATTTTGGCTGTCTTGTCAATGGATTGTAACCTCGACTCGGCTGAGATTACTGCTCGTGAAAGTGGCAAAGTATTTCGCTGTTTACGAGGTGATGGTGGTTTGCTTTGTGGCTCCCTTAGTGGTGTGGCTGGGATGGAAGCAGATGCACTGTTGCTTGCAGAGGCAACGAAGAAAGTTTTTGGTTCATTGAgccaagaaaatgattttcttaCCATAGAAGATGAGGTTTCTGATGCAAAGGGTGCTTGTGAGAAGACTTCAGTGACTAGTGGTGATATTCCAGAATGGGCGAAAATTCTTGAACCTGTTCGAAAACTACCAACAAATGTAGGAACCAGAATCCGAAAGTGTGTTCATGAAGCTTTGCAGAAGGATCCACCAGAGTGGGCAAGGAAAATACTTGAACATTCAATTAGTAAGGAAGTGTATAAGGGCAACGCATCAGGACCAACAAAGAAAGCTGTAGTTAATCTGTTGAATGAAATATCTGGTGGAGTACAACAGAAGCCCgataaaggaaggaaaaagaagacgGTTATATCTATTTCAGATATCATCATGAAGCAATGTCGTATTGTCCTACGTCGTGCTGCTGCTGCAGATGATGCAAAAgttttttgtaatttgcttGGTAGAAAACTAATAAACTCTTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCAGCCATGGTATCTCGTCCTCTTGACTTCAGGACTATTGACCTTAGATTGGCTGCTGGGGCTTATGGTGGATCTCATGAGGCTTTCCATGAGGATGTTCGCGAGCTGTGGGGTAATGTTCGTATTGCTTTTGGAGACCAACCTGATTCAGTTGAACTGGCTGACACGTTAtcccaaaattttgaattattgtaCAACAAGGAGGTTGTTACCTACATCCAAAAGTTTTTGGAGTATGCTAAATTGGACTGCTTGACTGATgaagtgagaaaagaaatagatgatTTTCTTGCTTCAACAAGTGAGATTCCTAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGAGATGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACTTATTGCTTGAATCCTCCCCTTGCTAGAATTCCAGAAGGAAACTGGTATTGCCCTTCTTGTGTTGATGGCAAACATACAGTTCAAGATGTATCAGAACATCCATACATCATTGGCAAACGCCAAAGCAAGAAATTTCAGGGAGAAGTTACTTCTCTTTACTTAGAGGCTTTAACAAATTTGTCTACTGTtatggaagagaaagaatacTGGGAGTACGGCATGGGCAAGAGAACATTCCTCCTCAAGTTTTTGTGTGATGAGTTCCTCAACTCATCTCTTGTTCGTCAGCACCTTGAGCAATGTGCTGAGTTGTCAGCTGAGTTACATCAGAAATTGCGTTCCCTTTCTCTAGAGTGGAAAAGCCTGAAAACTAAAGAAGATTTCTTATCTGCAAAAGCTGCAAAAGCTGACACTTGTTCTTTAATTGCTTCTGGGGAAGTGGTTCTCAAGGAAGGGATTGCAGCATCACTCTCAAACCCTGGTAAATCTCTGGTCCAGCCACACACTGCATGTGAGGGTCCTAACAATTGTGGGGTATTTGCTGGTAATCAGCCTACGCAAGAgacaaataaagagaaaactaGGTTTACTGTTGTCGATAAAAGTATATCTGTGACAAATTCAGATAATGAGAGCCACTCCATTGATCTAGAGGGACAATTGAAAAATGTCTGTGTGTCAGCGGATGACAGTAAATTGGCTACAAATAGTTTTTCCTGCATGGATGCACAGTCTGGTGGTAAATCTAATAAACATACATCATCAAATCACATGCCTCAAGAAACTAATGGTTGTGGCAGAGCAGCTCAGGTGCAGGGTAATTCGCAGATATCTGAGGGAAGGGATACATCTACGCTGCCAACATATCAGCAAGGGCAATGTGTCTCTGTTGATGCTACTAAGAGTGTTGTGAATGAAGTAGAATCTTACCACCTTGAACTGCATGCAATCAGGCATGATATTTCACAACTGCAAGACTCAATTGCTAATGTGGAATCACAGCTGCTGAAACTATCTGTTCGCCGGGATTTCTTGGGTATTGATTCCATTGGTAGACTGTACTGGTCTTCAGCTATTCCTGGGGGATTTTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTGCATGGGAGAAGATTAACAGATAGTGGAGACTCTGTAAACCAGAGTTCTGTTATGCAGAATTATGCTCTTTCTGGCAAGATTGCCTATCAGGCTTCTTCTGGTTTTATGTCTCAATTGAATAATGCCACAGACTTCTCTTCACCATGGGTTGCTTATCAATGTGATGCTGAAATAGATGAGCTCATTAGTTGGCTGAAGGATAATGACCCTAAAGAAAGGGAACTGAAAGACTCCGTCATACAATGGCAGAAGTCAAGATTCCAAGAAGTAAGTAGGACAGTGAGTGAAGATCAAGATGAGCACCCTGAACCTTCTTCAATGCCAAgaaataatgagaaaatagTATCTAATTCTCTTGTTACGAAGGCAACCTCCTTGCTAGAGAGGAAGTATGGTCCCTTCTTTGAGTGGGATCCAATTGAGGTTTTGAAGAAGCGGGGTAAGAAAGCAAAGGTaacaaatgatgaaaaattgtACAGGTGTGAGTGCCTAGAACCCATATGGTCTTCTAGGCAACATTGCATGTCTTGCCACAAAACCTTCTTGAGTGATGTTGAACTAGAGGAACATGATGATGGAAAATGCAATGCAGGTATGCCAGTCTCTGAGAAAAATAGGGAGAATAATGGATCATCCAAGGGAAGAGGCAACGCAAAATGTGTGACTACTTGTGAAAACTTTACTGGTGATGCTGACACAGCTGGAACTGTGGCTAATGGATATTCCAATCTTAGctcaacattaattaaattttcaaatgaagAGTCGAAATGCCCATATAACTTTGAAGATATCTGCTCAAAGTTTGTGACAGAAGATTCCAATAAGGAACTTGTTAGAGAAATAGGTCTAATTGTTTCAGACGGAATTCCATCCTTTATTACTTCTGTATCTCCTTATGTTAGCGATTCTACCCTCATGCAAATATCTGCTCAAAAGGAGGGTGTTAGTCATGGTGGTGGTTCAAAGGATTTTGGAACAAAGGCTTCTGAGGGAAACACTGATGGTAATGGTGTATGTCATGACTACAAATCTAATAGTTCTCCTGGAAAGCTTGTTACAAATGAAAGCAGTAAAGCAGGGAAATCCAACAGACCAACTATGGGATGTTCACGTCAAAGAGATGGAAATTCCTCTTTTTGTAGTCCTTCAGAACTGGAGGGTGAGCACTGCTGTGTGGTTCCCTTGTCTTCATTGAGACCTATAGTTGGAAAGGTTTCACATATTTTGAAGCAACTGAAGATCAGCCTGCTGGACATGGATGCTGCACTCCCTGAAGTTGCTTTCAGACCATCAAAAGCACAGTTGGAAAGAAGATGGGCCTGGCGTTCATTTGTTAAATCTGCAGGGACTATATATGAGATGGTTCAGGCAACAATTACGTTGGAAGATATGATTAAGACAGAGTACTTGAAGAATGACTGGTGGTACTGGTCATCACTCTCGGCTGCTGCCAAAACTTCTACTATGTCTTCCCTTGCCCTTCGTATATACTCCCTTGATTCGGCTATTGTATATGAGAAGATCTTGTCCAATTCTAGCTTAAATGATAGCTCTGAACCTGCTGGCATAGTAGAACCCAAACTGTTGGCCGTTTTGGATTCAGAGAAATCCAAAGCAAGCAGGAAGTCTACCAGAAAGAGGAAGGAACCAGATGGTTG 6722 0.4079 MELNDSGDELRDSKNPQDSRSGLGIDLNEIPSPSFVETLPDSIDVVRTYHENPAPPPGGPAGIPGDVRGSACASCGKPEVRGHVVVCDGCERGFHLGCAGMRSRQAVKFDEWVCGECVSSGVKSKRWPLGVKSKQLLDINASPPSDVDGEGTEEMQDLRKHTLGDNSFGANPFGAPVTYSNFFNGSAFGFQKASGLVTDAVRVGFDDILNHTQSMARSFKELDVDFPVGKHRNSNNTAIRLPSRSPNEIFLQALRDFISERRGVLEEGWRVEFRQSMSSSELYAVYCAPDGKIFDSVYEVACYLGLMSSYNCMESDIRNERPPSTLDGSHLSRKRKSARAPTVNGFAENKGNFMSYNHKDPSSDGAHVECANTCGNISKAQKIGREDDAHSCPHPCADGLPLQFEDFFVLSLGKVDVRPTYYDVNLIWPIGYRSCWHDKITGSLFTFEVLEGGDSGPVFRIRRRSCSEFPVPVGSVLLSISNLSHFVSQTSEGERKSYDNLDWDDEGSIQMIFSDPCTPTENDVLSCLASCSGDSYDALASDTLQPMANHTSDGLGLIDEIGEILVEERSSSLAWRNISQKLIDVCTEICNQKGTLKFYCNHTENETDFHKLDKKGGKNEIHSTPLSRFCGLPGSVSIPVIIEANNEANSLHEVLGNWLEQDRFGLDVEFVQEIIEQLPEVQCCSQYQFLNNRSNCSSFLTVGNGFLVVEWRGGSQYKEEEVVQSLYRRPKKARMAEGCFKEERCPPPGKVLCSTVACELVGDVFQAWELLGRFHEILGLKEPLSLDELERELVNPWYDGSDFLEKSEKEAEGSQDISSHKVDGTDGPILSSSCNAGPSGSWESPHVFIQVETEAAKEAAQVKLASFTYARCFGVALTKAHNSLLGVLIGELQSKVAALVDPNFDPGETKTKRGRRKDVDNANPSKRTKLNMFPINELTWPEVARRYILAVLSMDCNLDSAEITARESGKVFRCLRGDGGLLCGSLSGVAGMEADALLLAEATKKVFGSLSQENDFLTIEDEVSDAKGACEKTSVTSGDIPEWAKILEPVRKLPTNVGTRIRKCVHEALQKDPPEWARKILEHSISKEVYKGNASGPTKKAVVNLLNEISGGVQQKPDKGRKKKTVISISDIIMKQCRIVLRRAAAADDAKVFCNLLGRKLINSSDNDDEGLLGSPAMVSRPLDFRTIDLRLAAGAYGGSHEAFHEDVRELWGNVRIAFGDQPDSVELADTLSQNFELLYNKEVVTYIQKFLEYAKLDCLTDEVRKEIDDFLASTSEIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHTVQDVSEHPYIIGKRQSKKFQGEVTSLYLEALTNLSTVMEEKEYWEYGMGKRTFLLKFLCDEFLNSSLVRQHLEQCAELSAELHQKLRSLSLEWKSLKTKEDFLSAKAAKADTCSLIASGEVVLKEGIAASLSNPGKSLVQPHTACEGPNNCGVFAGNQPTQETNKEKTRFTVVDKSISVTNSDNESHSIDLEGQLKNVCVSADDSKLATNSFSCMDAQSGGKSNKHTSSNHMPQETNGCGRAAQVQGNSQISEGRDTSTLPTYQQGQCVSVDATKSVVNEVESYHLELHAIRHDISQLQDSIANVESQLLKLSVRRDFLGIDSIGRLYWSSAIPGGFSRIVVDASAALLHGRRLTDSGDSVNQSSVMQNYALSGKIAYQASSGFMSQLNNATDFSSPWVAYQCDAEIDELISWLKDNDPKERELKDSVIQWQKSRFQEVSRTVSEDQDEHPEPSSMPRNNEKIVSNSLVTKATSLLERKYGPFFEWDPIEVLKKRGKKAKVTNDEKLYRCECLEPIWSSRQHCMSCHKTFLSDVELEEHDDGKCNAGMPVSEKNRENNGSSKGRGNAKCVTTCENFTGDADTAGTVANGYSNLSSTLIKFSNEESKCPYNFEDICSKFVTEDSNKELVREIGLIVSDGIPSFITSVSPYVSDSTLMQISAQKEGVSHGGGSKDFGTKASEGNTDGNGVCHDYKSNSSPGKLVTNESSKAGKSNRPTMGCSRQRDGNSSFCSPSELEGEHCCVVPLSSLRPIVGKVSHILKQLKISLLDMDAALPEVAFRPSKAQLERRWAWRSFVKSAGTIYEMVQATITLEDMIKTEYLKNDWWYWSSLSAAAKTSTMSSLALRIYSLDSAIVYEKILSNSSLNDSSEPAGIVEPKLLAVLDSEKSKASRKSTRKRKEPDG 2240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00643 2240 MobiDBLite consensus disorder prediction 809 838 - -
Bva04g00643 2240 PANTHER OS02G0192300 PROTEIN 19 2240 - -
Bva04g00643 2240 SUPERFAMILY FYVE/PHD zinc finger 1274 1338 IPR011011 -
Bva04g00643 2240 MobiDBLite consensus disorder prediction 1 33 - -
Bva04g00643 2240 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 255 322 IPR001739 GO:0003677
Bva04g00643 2240 SUPERFAMILY Bromodomain 1122 1242 IPR036427 GO:0005515
Bva04g00643 2240 MobiDBLite consensus disorder prediction 906 924 - -
Bva04g00643 2240 ProSiteProfiles Zinc finger PHD-type profile. 69 120 IPR019787 -
Bva04g00643 2240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1246 1345 IPR013083 -
Bva04g00643 2240 MobiDBLite consensus disorder prediction 1777 1799 - -
Bva04g00643 2240 ProSitePatterns Zinc finger PHD-type signature. 1288 1332 IPR019786 -
Bva04g00643 2240 MobiDBLite consensus disorder prediction 1777 1794 - -
Bva04g00643 2240 ProSiteProfiles FYR domain FYRN motif profile. 399 452 IPR003888 GO:0005634
Bva04g00643 2240 MobiDBLite consensus disorder prediction 1554 1597 - -
Bva04g00643 2240 MobiDBLite consensus disorder prediction 820 838 - -
Bva04g00643 2240 MobiDBLite consensus disorder prediction 903 925 - -
Bva04g00643 2240 ProSiteProfiles FYR domain FYRC motif profile. 543 691 IPR003889 GO:0005634
Bva04g00643 2240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Bva04g00643 2240 CDD PHD1_Lid2p_like 1287 1332 - -
Bva04g00643 2240 Pfam PHD-finger 1287 1333 IPR019787 -
Bva04g00643 2240 Pfam PHD-finger 72 119 IPR019787 -
Bva04g00643 2240 MobiDBLite consensus disorder prediction 1883 1902 - -
Bva04g00643 2240 CDD PHD_SF 72 117 - -
Bva04g00643 2240 MobiDBLite consensus disorder prediction 1 16 - -
Bva04g00643 2240 Coils Coil 1626 1653 - -
Bva04g00643 2240 ProSiteProfiles Zinc finger PHD-type profile. 1285 1335 IPR019787 -
Bva04g00643 2240 Gene3D - 1129 1245 IPR036427 GO:0005515
Bva04g00643 2240 MobiDBLite consensus disorder prediction 2002 2068 - -
Bva04g00643 2240 SUPERFAMILY DNA-binding domain 258 316 IPR016177 GO:0003677
Bva04g00643 2240 SMART PHD_3 1287 1333 IPR001965 -
Bva04g00643 2240 SMART PHD_3 71 118 IPR001965 -
Bva04g00643 2240 SUPERFAMILY FYVE/PHD zinc finger 71 129 IPR011011 -
Bva04g00643 2240 Pfam Methyl-CpG binding domain 256 308 IPR001739 GO:0003677
Bva04g00643 2240 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 19 2240 - -
Bva04g00643 2240 MobiDBLite consensus disorder prediction 2014 2068 - -
Bva04g00643 2240 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1367 1411 IPR028942 -
Bva04g00643 2240 ProSitePatterns Zinc finger PHD-type signature. 72 117 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00643 Bva-Chr4 4301739 4314638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00643 1 2240 C2H2 Transcription Factor Family AT3G01460 45.332 0.0 1785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva04g00643 MBD 4.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00643 K22768 - gmx:100820223 2852.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00643 04 4301739 4314638 Bva04g00643 04 4301739 4314638 ECH