Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00642 ATGGAATCCAGCCGTCTTTTCTTCGACCCTTACGCTTGCCGCGGGAACATGCTTTTCCTCGGGAATGGTGATTCTGTTTTTGGAGGAAGATCGGTGATGTACATGGAGGAAACCACAAAGAAGAGACCTTTCTTCAGCTCACCAGAGGAACTGTTAGACGATGAATATTACGACGAGCAGTTGCCGGAGAAGAAGCGCCGCCTCACTGCGGAGCAGGTCCATCTGTTGGAGAAAAGCTTTGAGGCGGAGAACAAACTGGAGCCAGAGAGGAAGACCCAGTTGGCCAAGAAGCTGGGATTGCAGCCAAGGCAGGTGGCTGTGTGGTTTCAGAACCGCCGGGCTCGGTGGAAGACCAAGCAACTTGAAAGGGATTATGACCTTCTCAAGTCTTCTTACGATTCCCTTCTATCAAAGTATGAATCTGTTGCAAAGGAGAATGAAAAGCTTAAAGCTGAGATGGTATCCTTAAGTGAGAAGCTTCAAGAAGACGACGTGTCCGGAACACCAGCATCAGGTGAAAAAACCGAGCCTGCTGCTGTGGATATGGTCCAACTTCCGGCCTTACCATTCAACATGAAAGTGGAGGATCGTCTGAGTTCTGGTAGTGGTGGAAGTGCAGTGGTGGACGAAGATAGTCGACAGCTGGTTGTGGACAGCGTTGATTCATACTTCGCAGCTGACAATTATGCTGATGCTGGATGCCAGTTAGCCGGAGGCGATAGAGTTCAGTCAGAGGAGGATGATGGCAGTGATGATGGCCGGAGTTACTTCTCCGACGTGTTTGTCTCTGAACCGCAAGACCAAGAGGACGGCGAGACATTGGGTTGGTGGTTCTGGTCTTA 842 0.5036 MESSRLFFDPYACRGNMLFLGNGDSVFGGRSVMYMEETTKKRPFFSSPEELLDDEYYDEQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLSKYESVAKENEKLKAEMVSLSEKLQEDDVSGTPASGEKTEPAAVDMVQLPALPFNMKVEDRLSSGSGGSAVVDEDSRQLVVDSVDSYFAADNYADAGCQLAGGDRVQSEEDDGSDDGRSYFSDVFVSEPQDQEDGETLGWWFWS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00642 280 CDD homeodomain 64 120 IPR001356 GO:0003677
Bva04g00642 280 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Bva04g00642 280 Gene3D - 57 125 - -
Bva04g00642 280 SUPERFAMILY Homeodomain-like 56 121 IPR009057 -
Bva04g00642 280 SMART HOX_1 62 123 IPR001356 GO:0003677
Bva04g00642 280 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Bva04g00642 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 264 - -
Bva04g00642 280 MobiDBLite consensus disorder prediction 238 273 - -
Bva04g00642 280 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Bva04g00642 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 264 IPR045224 GO:0003700
Bva04g00642 280 Coils Coil 132 159 - -
Bva04g00642 280 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Bva04g00642 280 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Bva04g00642 280 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00642 Bva-Chr4 4298742 4301494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00642 1 279 Homeobox Transcription Factor Family AT3G01470 58.131 3.15e-100 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva04g00642 Homeodomain 8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00642 K09338 - tcc:18600741 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00642 04 4298742 4301494 Bva04g00642 04 4298742 4301494 ECH