Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00608 ATGCGAGATCATTTTGTTCTGTCGGTTGGTCGGCTTCTCACTGAACCTACCCTTGAAGCTGCTATTGAGGATGAAAGGAGAATGCAGCAGGCCATTCCTTCATCAACCAATGATGATATGATTTATGTGCATAAAATGGATGTAGAAAATAGGTCATCTCAAGTTAAGATGGTAGAGTGTCGAATATGccatgatgaagatgaagatgcaAACATGGAGACACCCTGTTCTTGTTGTGGCAGCCTAAAGTATGCACATCGCAGATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTATCTGCGAGATTTGTCGGCAGCCATTTGAGCCTGGCTATACAGCACCACCTCCTCCATTTCACTATGGTGGTAGACCATTGAATTTCAGGGGGAACTGGGATTTACATAATCATCAATTCGTCGCAATGGTTGGAGGTGATGGGGAATTCTTTGACACTGACTTTGAATATTCAGGTCCTTCTACCAGGGCTCTGATATACTGCCGCATTGTTGCAATTCTTGTAATTTCTCTACGCTATGCTTTCATGGTTCTTCTGATTTTAAGGCATATCCTTCCATTTATCCTCAGTGATGCTGGGGAATATTCATTGACACTTTTCATGTTATTGATGTTGAGTACCTTTGGAGTACTTCTCCCTGTATTTATAGTGATCAAAGCATATACTGCATTCCAACGGCGACAACACCagGATCGGCATTTCTCCCTCACTTCTTCGCATGAGGAAAATAACTTGGGACTGCCTCAGTCGCGTGTCATTCGCATTTGGTG 791 0.4172 MRDHFVLSVGRLLTEPTLEAAIEDERRMQQAIPSSTNDDMIYVHKMDVENRSSQVKMVECRICHDEDEDANMETPCSCCGSLKYAHRRCVQRWCNEKGDTICEICRQPFEPGYTAPPPPFHYGGRPLNFRGNWDLHNHQFVAMVGGDGEFFDTDFEYSGPSTRALIYCRIVAILVISLRYAFMVLLILRHILPFILSDAGEYSLTLFMLLMLSTFGVLLPVFIVIKAYTAFQRRQHQDRHFSLTSSHEENNLGLPQSRVIRIW 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00608 263 Pfam Protein of unknown function (DUF3675) 111 227 IPR022143 -
Bva04g00608 263 CDD RING_CH-C4HC3_MARCH 60 106 - -
Bva04g00608 263 ProSiteProfiles Zinc finger RING-CH-type profile. 52 112 IPR011016 GO:0008270
Bva04g00608 263 SMART ringv_2 59 106 IPR011016 GO:0008270
Bva04g00608 263 SUPERFAMILY RING/U-box 56 109 - -
Bva04g00608 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 256 - -
Bva04g00608 263 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 256 IPR033275 -
Bva04g00608 263 Pfam RING-variant domain 60 105 IPR011016 GO:0008270
Bva04g00608 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 114 IPR013083 -
Bva04g00608 263 ProSiteProfiles Zinc finger RING-type profile. 60 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00608 Bva-Chr4 3999436 4003797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00608 19 105 C3H Transcription Factor Family AT5G05830 33.333 1.19e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00608 - - zju:107417121 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00608 04 3999436 4003797 Bva04g00608 04 3999436 4003797 ECH