Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00552 ATGGCCGATGTTGATTACCATGCAAAATCTAACCCTACCACCACCACAGCTCTGAAGCTCTTCGGAATAAGCATTCACAATGTTTCCCAAGATCACAGCGATGCAGAGTCGAACAAATCTCCATCTGGGTCATCGGAATCGGAGCCTTTGAACTCCGGGGAGGCCCAGAAATACGAGTGCCAGTATTGTTTACGGGAGTTTGCAAATTCACAAGCACTTGGTGGGCACCAAAACGcacataagaaagaaagacagcTGCTAAAGCGTGCTCAAATGCAAGCTGCTTTTGGCTTTGCTGCTTCACATAGATCAAATCCAATCATATCGGGGTTCTCACCACCGCCGCGCCTCCTTGCCAGAGCGTCGGCACCACCACGGCAGTCATCTTCATGGCTATATGGAAGTACTCAGCCAGCTTTTGAAGTATATCATTCAGGGACCTCTACAGCACCAGCTAGAAGAGTCTATGCAACTGGTGGTTATGGAGGGCCAGCTGCAACGGCTTTACCTGACGCCGGAGCCCGGCCGATACCTGTAATCGGTGGCTTTGGTGGTGGGGATGGTGGTGGCGATCAAGGGTTCGGTTTGGATTTGCATCTTAGTCTATA 608 0.4918 MADVDYHAKSNPTTTTALKLFGISIHNVSQDHSDAESNKSPSGSSESEPLNSGEAQKYECQYCLREFANSQALGGHQNAHKKERQLLKRAQMQAAFGFAASHRSNPIISGFSPPPRLLARASAPPRQSSSWLYGSTQPAFEVYHSGTSTAPARRVYATGGYGGPAATALPDAGARPIPVIGGFGGGDGGGDQGFGLDLHLSL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00552 202 Gene3D Classic Zinc Finger 30 103 - -
Bva04g00552 202 MobiDBLite consensus disorder prediction 29 52 - -
Bva04g00552 202 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Bva04g00552 202 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Bva04g00552 202 PANTHER ZINC FINGER PROTEIN 5 9 202 IPR044299 GO:0010090
Bva04g00552 202 PANTHER ZINC FINGER PROTEIN GIS3 9 202 - -
Bva04g00552 202 SUPERFAMILY beta-beta-alpha zinc fingers 56 85 IPR036236 -
Bva04g00552 202 Pfam C2H2-type zinc finger 58 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00552 Bva-Chr4 3627133 3628068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00552 13 202 C2H2 Transcription Factor Family AT1G67030 40.191 3.06e-35 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00552 - - jre:108984293 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00552 04 3627133 3628068 Bva04g00552 04 3627133 3628068 ECH