Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00533 ATGAAACCAAATGCATGTCAATTAGTGACATCACCTCAAAGATTGAGTCTTCATATACCAAGGAAGAAGAACCTAGCGAAGAAGGTTGAGGAGCTGAGCGCCCTATGTGGGATTGATGCATGTGCCATAAAGTTCAGTCCCTATGATTCCCAGCCAGAGGTTTGGCCATCTCCAACTGGTGTCCAAAACGTGATGATGGCTAGGCTCATGGAAATGCCTGAAATgcaacagaaaaagaagatgatgagCCAAGAGgactttttaagttttaaaatata 278 0.3813 MKPNACQLVTSPQRLSLHIPRKKNLAKKVEELSALCGIDACAIKFSPYDSQPEVWPSPTGVQNVMMARLMEMPEMQQKKKMMSQEDFLSFKI 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00533 92 Gene3D - 20 89 IPR036879 GO:0003677|GO:0046983
Bva04g00533 92 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 48 IPR002100 GO:0003677|GO:0046983
Bva04g00533 92 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 21 89 - -
Bva04g00533 92 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 89 - -
Bva04g00533 92 SUPERFAMILY SRF-like 12 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00533 Bva-Chr4 3492255 3493409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00533 2 88 Type I MADS-box Gene Family AT3G05860 45.977 3.79e-21 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva04g00533 SRF-TF 7.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00533 - - palz:118035009 91.6633