Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00479 ATGTTTTCTTCCACATACAGTTCCAACCCTTTCCCTTGCtttccctcttcttcttcttcttaccCACCTCATCTTCCTTATCTAACCCATGAGAATGCAGCTGCTTCTGCAGATAACATTCTAATTCTTCATGACCCACTTGCAGCTATTCCCTTCATAGCCACAAATAATGCTCCAATCCCAGAAGCAGTCACCAATttggctgctgctgctgctgacTTTGCCGCTGGAATCGCGAAGCAAGACGAGGTTCCCTTGCCTCCCCATTTTCTCACCAACAAGAGAGCACCCAAGAAAGATAGGCACAGCAAGATTTACACATCGCAGGGTTTGAGGGACCGGAGGGTGAGATTGTCCATTGAGATCGCCAGGAAGTTCTTTGATCTCCAAGACATGCTAGGGTTTGATAAAGCAAGTAACACCCTTGAGTGGCTCTTCACTAAGTCGAAGAAAGCAATTAAAGATCTAGCTCTGAGTAAGAATAGCTCGAGTGCCGGTGGTGGTGACAGTGATGGTGCCAAGagcttctcttcctcttctgaCTGTGATGAAGTGGTTTCAGGGATCAACCAAGTTGTTAACATGGATATTGTGCCAAACCTAAAAGGGAATGATGATTCCAATGAAAAGTCATTGATGGGTTTTGATGCTGCTGTTGCTAAAGAGAAGAAGCTGAAAAGGGCACAGAAGGATATTCAACCAGTTTTTGTAAGGGCAAAGAAGGAGTCAAGGGAAAAGgcaagagcaagagcaaggGAAAGGACAAGTTACAAGATGTGCACTACCACTAGCACTGGGAGAGTGCAAGAGTTGAAGAAAAGATGCTCTGCTGCAGAAAATCCTCAAATCCTGCACCAATTGAGATCCCCCGTTACTCAACCTGCAGAAGCATCAGCAAAATCTCCAAGGTTCCTGCAACCTCACCCAGTAACCAGTGAAGCACAAAGAGACAGCTTGAATGTTATTGAGAAATCTGTTGTGATCAAAAGGAAGTTGAAGCCATCCATGGTTTCTTCCTCTCATCATCACCAAAGCCTTGTGATCCCCAAGGAACCATGTTTTGACCAAAATGAGCAGCACCCATTTCCCAATTTGGCTCCAAATTGGGATACCAACAGTGGGATTGGGCGCTCTAGCTATTGTGCATTTGCCAGCATGAATCTATCAACAGAGCTTCAGATCTTTGGGAAGCCTTGGGAGGAGTGCACCAACCAGCAACGTTTAGAATA 1229 0.4215 MFSSTYSSNPFPCFPSSSSSYPPHLPYLTHENAAASADNILILHDPLAAIPFIATNNAPIPEAVTNLAAAAADFAAGIAKQDEVPLPPHFLTNKRAPKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFTKSKKAIKDLALSKNSSSAGGGDSDGAKSFSSSSDCDEVVSGINQVVNMDIVPNLKGNDDSNEKSLMGFDAAVAKEKKLKRAQKDIQPVFVRAKKESREKARARARERTSYKMCTTTSTGRVQELKKRCSAAENPQILHQLRSPVTQPAEASAKSPRFLQPHPVTSEAQRDSLNVIEKSVVIKRKLKPSMVSSSHHHQSLVIPKEPCFDQNEQHPFPNLAPNWDTNSGIGRSSYCAFASMNLSTELQIFGKPWEECTNQQRLE 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00479 409 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 6 406 - -
Bva04g00479 409 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 6 406 IPR005333 GO:0003700
Bva04g00479 409 ProSiteProfiles R domain profile. 241 258 IPR017888 -
Bva04g00479 409 MobiDBLite consensus disorder prediction 158 179 - -
Bva04g00479 409 Pfam TCP family transcription factor 97 261 IPR017887 -
Bva04g00479 409 ProSiteProfiles TCP domain profile. 98 156 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00479 Bva-Chr4 2873978 2876253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00479 42 161 TCP Transcription Factor Family AT1G67260 49.194 6.78e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva04g00479 TCP 1.9e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00479 - - gmx:100801549 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00479 04 2873978 2876253 Bva06g01071 06 8674253 8675540 ECH
Bva04g00479 04 2873978 2876253 Bva05g00628 05 3114036 3115334 ECH
Bva04g00479 04 2873978 2876253 Bva04g00479 04 2873978 2876253 ECH
Bva03g01855 03 16783751 16785466 Bva04g00479 04 2873978 2876253 ECH