Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00477 ATGGCTGCAAGAATCAACAGGAGGGATCCCCAGAGGTTGGAGCTTATCCCTGATCTAAAGAAACGTCGTGCCGCCTTCTCCAAACGCCGTTCTGGCCTCTACAAGAGGGCCTATGAACTCAGCATCATGTGTGGCATAGACATAGCCCTTGTCATGTTCTCTCCAACAGACAAGGTTTACAGTTTTGGTTGCCCTAATCTGATTTGTCTCATGGACCGCTACCGCGTACAACCTCCATTTCCCATGAATCACCCACAACACATCATTGAGAATCACTGCAATCCCAGCCTGCTTGTGCTCAATGAAAGGCTCAACATATTAAAGGAGCAGTCCGATGCTGAGGAGCAACGTGGAAAAGAACTGGATCAAGTGGAGAAAGCTTGCCGAGAGCACAACTGGATGGAAGGTCCTATTGATCAGATGACAGAATCAAAACGGCAGCGTTTTGTGGATGCACTTGTGGGGTTGAAGAAGAAGGTTCAAGAGGCTCAACGGCTCAAAATTCAGAGCTCTAATGCTGAATCACATGCTGGGTTTTTCTCAGGAAGTTGTTCCTCTCATCCACCTCATTTGTTTTCAGGTGaaggttcttcttcttccgGCCCGGCTCGGGCTTTTGCCGGCGGTTCTTCCTCAAACCGTGGTGCTCAAGCGCAGCACCCTCCACTGCCATCAGGGGTGTTTCAACCGCCGGTGGCTCATCAGAATCCTTTGCTTCAGAATTTAGCTTTTAATGAGAATGCAATTGGGATGGTGCCAACACCTCGCAGCCAAGACAACGTGGGAGATGGACATGGACGCTGGCATTTCTG 812 0.4865 MAARINRRDPQRLELIPDLKKRRAAFSKRRSGLYKRAYELSIMCGIDIALVMFSPTDKVYSFGCPNLICLMDRYRVQPPFPMNHPQHIIENHCNPSLLVLNERLNILKEQSDAEEQRGKELDQVEKACREHNWMEGPIDQMTESKRQRFVDALVGLKKKVQEAQRLKIQSSNAESHAGFFSGSCSSHPPHLFSGEGSSSSGPARAFAGGSSSNRGAQAQHPPLPSGVFQPPVAHQNPLLQNLAFNENAIGMVPTPRSQDNVGDGHGRWHF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00477 270 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Bva04g00477 270 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Bva04g00477 270 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Bva04g00477 270 MobiDBLite consensus disorder prediction 190 219 - -
Bva04g00477 270 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 62 IPR002100 GO:0003677|GO:0046983
Bva04g00477 270 SUPERFAMILY SRF-like 8 86 IPR036879 GO:0003677|GO:0046983
Bva04g00477 270 MobiDBLite consensus disorder prediction 251 270 - -
Bva04g00477 270 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 20 170 - -
Bva04g00477 270 PANTHER MADS BOX PROTEIN 20 170 - -
Bva04g00477 270 CDD MADS 13 63 - -
Bva04g00477 270 MobiDBLite consensus disorder prediction 190 232 - -
Bva04g00477 270 Gene3D - 18 95 IPR036879 GO:0003677|GO:0046983
Bva04g00477 270 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Bva04g00477 270 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Bva04g00477 270 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00477 Bva-Chr4 2852111 2853056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00477 11 213 Type I MADS-box Gene Family AT5G60440 32.536 5.74e-23 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva04g00477 SRF-TF 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00477 - - ghi:107925389 135.191