Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00452 ATGCCAATGGtACCCATACGTGGTCCAATTCAAGGTATGGAAACTGTAGTGGCAACAGTGAGTGGTTACCATGGCACAGAGCGATCCAACCTCATTAAGTTGATAACACACGCTGGAGGGAATTATGTTGGCAGGATGTCAAAGTCAATCACACACCTGATTTGTTGGAAATTTGAGGGAAAGAAATTTGATCTTGCCCATAAATTCAACACAATTATAGTGAACCACCAATGGGTTGAAGACTGCATCAAGCAAAGAAGGCGTCTCCCAGAGAATTCTTATGTCTTGCTAAGTGGAGAAGAAGTAGGGCCATTGGTGCTGGAAGTTCCACTATTTGTTCAGACAAGTAGCTTGACTAGGGAAAATTTGCCAAGTGAGAGAGCAGATGATCTTGGTTCCCTAAACCAAAATAGTGAGTTTACTTCTGGAGATTCTGGAAATCCTGTTTGGGCAGATTCTTCTATAATTAACAAGAAAAATAAgctgaagctagttgagaagGATGTAAAGCACAGtaagaagacaaataaaagatgttttgatgatatttctctttctagaATACTCAATGTAGAGCTTAAGGAGTTAAGTTCTCATTCTTTTCGAGAggcaaggaaaggaaaaagaaagatctcTGATAGTGATGAAGTTGCTACTTTAGCTGAATGCTCTCGTAGAGGAAGAAGACttgtcaaaaataatgttCATGAAGATGTGTTGGATCCATTGATTTCTGATTCAAACCATGAGGAAAAGCATAGTAGAAGTAGGCCACATACTGATCCTGTAGCTCCCTCTTGCCTCTCGGGAGGCGTGACTAATGAtaatattcaagaaaatagagaaggaTCAGGAGATGAATCAACTAATCAAAGTGGGATGATCAATGCAGCTTCAGATGGAACTGAACAGATCAAAGATTCCAATAACTTATCCACTtctagaaatttaattttatgtatggAAGATCCGCTACCTACTACGGAGCAAACACCAGCGGATGTCGGTTCTGATGCTGACAATGACCAGGTTGATCAGGTTGCTGGACCAACTACTTCAACAGAGTTGTCATGTGTTATATGTTGGACTGAGTTCAGCTCAACACGGGGTATTTTGCGATGCGGACACCGGTTTTGTTATTCATGCATCCAGACTTGGGCTGATCAATTGCTTTCAAGGAGAAAACTTTTGACCTGCCCTTTGTGCAAGATGTCTTTTGCGCACATCATAAAGGTTGATGATGCAGCATCTACTGATCAAAAAGTATACTCACAAACAATCCCATGTGAAATTCCAACTTCAGATGTCTTTATCCTTGCGGATCGAGAATCACCCAATTATGGTTCTGAGATTGCTGCCTGTGTTGTTTGCCGTGGTCGGGAACCCGAGGATCTCCTTGTGAGTTGTAATGTTTGCCAGATTCGACGAATTCATACCTATTGCCTGGATCCTCCATTATTTCCATGGGCATGCACTCACTGCAAGGATCTCCGGATGCTATTTCATAATCACTG 1514 0.3824 MPMVPIRGPIQGMETVVATVSGYHGTERSNLIKLITHAGGNYVGRMSKSITHLICWKFEGKKFDLAHKFNTIIVNHQWVEDCIKQRRRLPENSYVLLSGEEVGPLVLEVPLFVQTSSLTRENLPSERADDLGSLNQNSEFTSGDSGNPVWADSSIINKKNKLKLVEKDVKHSKKTNKRCFDDISLSRILNVELKELSSHSFREARKGKRKISDSDEVATLAECSRRGRRLVKNNVHEDVLDPLISDSNHEEKHSRSRPHTDPVAPSCLSGGVTNDNIQENREGSGDESTNQSGMINAASDGTEQIKDSNNLSTSRNLILCMEDPLPTTEQTPADVGSDADNDQVDQVAGPTTSTELSCVICWTEFSSTRGILRCGHRFCYSCIQTWADQLLSRRKLLTCPLCKMSFAHIIKVDDAASTDQKVYSQTIPCEIPTSDVFILADRESPNYGSEIAACVVCRGREPEDLLVSCNVCQIRRIHTYCLDPPLFPWACTHCKDLRMLFHNH 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00452 504 Pfam Ring finger domain 357 403 IPR001841 -
Bva04g00452 504 Pfam twin BRCT domain 16 78 IPR001357 -
Bva04g00452 504 MobiDBLite consensus disorder prediction 129 146 - -
Bva04g00452 504 MobiDBLite consensus disorder prediction 267 308 - -
Bva04g00452 504 MobiDBLite consensus disorder prediction 241 308 - -
Bva04g00452 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 502 IPR013083 -
Bva04g00452 504 PANTHER F5A8.9 PROTEIN 9 502 - -
Bva04g00452 504 SMART ring_2 358 402 IPR001841 -
Bva04g00452 504 Gene3D BRCT domain 11 95 IPR036420 -
Bva04g00452 504 ProSitePatterns Zinc finger RING-type signature. 374 383 IPR017907 -
Bva04g00452 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 428 IPR013083 -
Bva04g00452 504 ProSiteProfiles BRCT domain profile. 5 96 IPR001357 -
Bva04g00452 504 SUPERFAMILY BRCT domain 10 96 IPR036420 -
Bva04g00452 504 SUPERFAMILY FYVE/PHD zinc finger 440 496 IPR011011 -
Bva04g00452 504 SUPERFAMILY RING/U-box 354 409 - -
Bva04g00452 504 MobiDBLite consensus disorder prediction 242 259 - -
Bva04g00452 504 SMART BRCT_7 7 86 IPR001357 -
Bva04g00452 504 ProSiteProfiles Zinc finger RING-type profile. 358 403 IPR001841 -
Bva04g00452 504 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00452 Bva-Chr4 2701190 2707852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00452 34 102 Core DNA Replication Machinery Family AT4G02110 42.254 3.05e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00452 - - gmx:100815034 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00452 04 2701190 2707852 Bva04g00452 04 2701190 2707852 ECH