Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00430 AtgttgaaacaagaaaacgGCGGTGGCGATGGCAGCGCCGGCTGTAATAACTGGCCACGTATCTGTGACACGTGTCGTGTCTCAGCATGCACAGTGTACTGCCGTGCTGACTCAGCTTACCTCTGCGCTGGCTGCGACGCCCGTGTCCATGCCGCCAACCAAGTGGCTTCGCGGCATGAACGCGTGTGGGTGTGTGAGGCATGTGAACGTGCCCCGGCTGCATTTCTATGCAAAGCCGACGCTGCTTCCCTGTGTGCCGCCTGTGACGCCGACATCCACTCGGCGAACCCACTGGCCAGCCGCCACCACCGTGTCCCAATTCCGCCAATCTCTGGTTATGGGGCCCCAGCTGGGGAAGAAGGGTTCTTAACACGTGgaggtgaagaagaagaagagtttatggatgaagaagatgaagaagaggcAGCTTCGTGGTTGTTGCTCAATCCCATGAAGAATAACAACAATCTGAATAATGGGTTTCTGTTTAATGGGGAAGTTGATGAGTATTTGGACCTTATGGATGGTGGTCATAGCCAGTTCACGGATCAGTATGGCCAAAatcagcaacaacaacaatacgGTGTCGTTTCTCACAAGAGCTATGGAGGTGATAGTGTGGTTCCTGTTCAGTGTGGTGAGGGGAAAACTCATCAgttgcagcagcagcagcagcaagcACAGCATTTTCAGCTAGGCTTGGACTTTGAGCCATCAAAAGCTGCTTATAGTTACAGTGCTTCCATTAGTCAAAGTGTTTCCATCTCATCAATGGATGTTGGAGTTGTACCAGAATCAACAATGAATGATGTCTCAATTTCCCATCTAAGAACCCCAAAAGGGACAATTGACCTTTTCTCTGGACCTGCCCTTCAGTTGCCATGCCAACTTACACCAATGGACAGGGAAGCCAGGGTCTTAAGATAcagggagaaaaagaagacaagaaaGTTTGAGAAGACAATCAGGTATGCTTCAAGGAAGGCCTATGCAGAGACCAGACCACGTATCAAAGGCCGATTCGCGAAGAGAACCGATGTAGAAGCCGAAGTTGATCAGATGTTCTCCACAACACTCATGACAGAAACTGCCTATAGCATTGTTCCCTCTTACTG 1115 0.4448 MLKQENGGGDGSAGCNNWPRICDTCRVSACTVYCRADSAYLCAGCDARVHAANQVASRHERVWVCEACERAPAAFLCKADAASLCAACDADIHSANPLASRHHRVPIPPISGYGAPAGEEGFLTRGGEEEEEFMDEEDEEEAASWLLLNPMKNNNNLNNGFLFNGEVDEYLDLMDGGHSQFTDQYGQNQQQQQYGVVSHKSYGGDSVVPVQCGEGKTHQLQQQQQQAQHFQLGLDFEPSKAAYSYSASISQSVSISSMDVGVVPESTMNDVSISHLRTPKGTIDLFSGPALQLPCQLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLMTETAYSIVPSY 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00430 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 3 371 - -
Bva04g00430 371 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Bva04g00430 371 CDD Bbox1_BBX-like 21 64 - -
Bva04g00430 371 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 371 IPR045281 GO:0009909
Bva04g00430 371 SMART bboxneu5 17 64 IPR000315 GO:0008270
Bva04g00430 371 SMART bboxneu5 65 107 IPR000315 GO:0008270
Bva04g00430 371 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Bva04g00430 371 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Bva04g00430 371 Pfam CCT motif 302 344 IPR010402 GO:0005515
Bva04g00430 371 CDD Bbox1_BBX-like 64 107 - -
Bva04g00430 371 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00430 Bva-Chr4 2566888 2569389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00430 1 371 C2C2-CO-like Transcription Factor Family AT3G02380 58.021 2.81e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva04g00430 zf-B_box 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00430 - - dzi:111305715 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01917 03 17294159 17297320 Bva04g00430 04 2566888 2569389 BWGD
Bva04g00430 04 2566888 2569389 Bva04g00430 04 2566888 2569389 ECH