Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00423 ATGGCGTCAAAAACGGAAAGCGAAAATTCAATTGATACTGCTCCATCATCgCCAAAGACTATATACAAAGACCCAGATGACGGGAGGCAGCGATTTTTGCTTGAATTGGAATTTGTTCAGTGCCTTGCGAATCCTACTTACATCCACTATTTGGCTCAGAATCGGTATTTTGAGGATGAAGCATTCATTGGGTACTTGAAGTACCTTCAATACTGGCAACGGCCCGAAtacatcaaatttattatGTATCCTCATTgcctcttttttcttgaacTTCTTCAAAATGCTAACTTTCGAAATGCAATGGCACATCCTGGCAATAAGGAACTGGCACATAGAGAACAATTCTACTTCTGGAAAAACTACAGGAACAATAGGCTAAAACACATTTTACCAAGATCGCTTCCTGAACCTAGCGCTACGCCTGCACCTCCTGCTCCTGCATCAAATCCATCTCAGCCGTCTGCGCCTTCTATGCCGCCGGTACCAGCTGCAAATGTTGCTGGGACGCCATCATCTGCACAAGCTCCTTCTCCAATGCCGTACGGTATGCCCCCTGGATCAAAAAACGATATGAGGAATCCTGCAGTAGAtcgaaggaagagaaagtg 611 0.4157 MASKTESENSIDTAPSSPKTIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGNKELAHREQFYFWKNYRNNRLKHILPRSLPEPSATPAPPAPASNPSQPSAPSMPPVPAANVAGTPSSAQAPSPMPYGMPPGSKNDMRNPAVDRRKRK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00423 203 MobiDBLite consensus disorder prediction 1 24 - -
Bva04g00423 203 MobiDBLite consensus disorder prediction 137 161 - -
Bva04g00423 203 Pfam SOH1 30 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Bva04g00423 203 MobiDBLite consensus disorder prediction 133 203 - -
Bva04g00423 203 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 3 203 IPR008831 GO:0003712|GO:0006355|GO:0016592
Bva04g00423 203 MobiDBLite consensus disorder prediction 1 17 - -
Bva04g00423 203 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 119 IPR038089 -
Bva04g00423 203 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 3 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00423 Bva-Chr4 2525501 2528825 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Bva04g00423 Med31 3.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00423 K15153 - gmx:100527879 319.316