Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00421 ATGGCCGAATCTTCCAACCCTGAACTTCCTCACCCTCTTATCATCTCAGAAAATTCTGAAGAATCACACCCAGATGATTCACTATACCCCATTGATCATTTGGGCATCGAGAATCCCTTTCACTCCTTTGGCCCCTTCACACCCGAATTGTCCTTCGACCACAGAAGTAACCCTTCGGGTTGGTACACTGATTCGGACACCGATTCGGTGAGTTGCTTTGTCACAGATCTTTTCGAAAGTCACTCCTCCCAGCAATCTCATCCTTGCTGTGATGATGGGTCTGATATAAATCCCTTTTCTGGGGTTGTTTACGATGATGATGGGGAAGAAGGGTCTAATTATTCGGAGGAATTAGAGTTAGAATCAGGGTTTGGGTTTGAAAATGATGATGGGATTGGTGAGAATTCGAGTTCAGAACGGGTTAATTCGCATAGGGATGGCCTTAGGGTTGTTGGGTTCAGTTCTGATTCGGATTCTAATAGTGTGGATGAGTTTGATAGAGCTATGGAATTGTATTCTGGGGAAAATGATGATAATAGAAATAGTGATTTTGATGATTCTGATGTCCGTTTGTGTTGGGATAGGCTTTGTTTGGGGGACCAAAGGATCCtgaatgaaaatttggaatgGGAGGAAGTAGAGGAAAGGGTTAATGAGAGAGAAGACTTGAGCGTGgtgattgatgatgttgatGATCGTTCAATAGCATCTGGGATTTCTAATGGAGAAGAAACAGGAGAAGATGCATTGAGATACCTTGAATGGGAAATTCTGATAGCAGTTAACAATTTGGAGAGGAACATGGACTTGGAAAATGATGACTACATATATGCAGCTGAATACGATGTTCTTTTCGGGCAATTTTTGGAAAACGACAGTGCCTTAAAGGGTAGTCCTCCTGCAGCTAAAAGTGTGGTGGATAGTCTTCCTTTTGTGGAATTAACAAAGGAGGACTTGCAGGGAAAGAATGTAGCATGTGCCATCTGCaaagatgatattttattgGAGGAGAAGGTGAGGAGGCTTCCCTGCTCACACTGTTATCATGGAGACTGCATTATGCCATGGTTGGGCATTCGTAATACATGCCCTGTTTGTCGGTTTGAGTTACCCACAGATGATCCTGATTATGAGCGGAGGAAGAGTCTGAGAACTGCTCATGATCTTTTGGAGTTCACAGAGCAGATGCAATTTTG 1196 0.4181 MAESSNPELPHPLIISENSEESHPDDSLYPIDHLGIENPFHSFGPFTPELSFDHRSNPSGWYTDSDTDSVSCFVTDLFESHSSQQSHPCCDDGSDINPFSGVVYDDDGEEGSNYSEELELESGFGFENDDGIGENSSSERVNSHRDGLRVVGFSSDSDSNSVDEFDRAMELYSGENDDNRNSDFDDSDVRLCWDRLCLGDQRILNENLEWEEVEERVNEREDLSVVIDDVDDRSIASGISNGEETGEDALRYLEWEILIAVNNLERNMDLENDDYIYAAEYDVLFGQFLENDSALKGSPPAAKSVVDSLPFVELTKEDLQGKNVACAICKDDILLEEKVRRLPCSHCYHGDCIMPWLGIRNTCPVCRFELPTDDPDYERRKSLRTAHDLLEFTEQMQF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00421 398 CDD RING-H2_RNF126_like 326 367 - -
Bva04g00421 398 MobiDBLite consensus disorder prediction 1 30 - -
Bva04g00421 398 SUPERFAMILY RING/U-box 308 373 - -
Bva04g00421 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 373 IPR013083 -
Bva04g00421 398 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 56 398 - -
Bva04g00421 398 Pfam Ring finger domain 326 367 IPR001841 -
Bva04g00421 398 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Bva04g00421 398 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 56 398 - -
Bva04g00421 398 SMART ring_2 326 366 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00421 Bva-Chr4 2505684 2507419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00421 142 382 C3H Transcription Factor Family AT3G02340 39.033 1.12e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00421 - - gmx:100812037 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00421 04 2505684 2507419 Bva04g00421 04 2505684 2507419 ECH