Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00410 ATGTTCAGAGAGACCAAAGAATGGTGGTACAAGAATCGAGCTCATCTTAGCCGATGTGCAAATGAGCGTCGTTCAAGTTTGACAACTCTTCCGATACGCACAAATGGATTGGGAACAAGCACTGACTTTAGCGCCTCTATTACAAGTTCTATAACCACTTCAAGAACAGAAAATCAGCAGAAAAATTCTCATTTCTCTTGGTGGAATCATCAAAACAAAGATCAGTTTGCTTCAGCATCAGGAATCCTTAAGTACTCATACAAAGACATTCAAAAGGCTACACAAAATTTCACAACTGTCTTGGGACATGGATCATTTGGTGTGGTTTATAAAGCTACAATGCCTACAGGAGATGTGGTCGCTGCAAAGGTGCTTGCTTCCAATTCCAAACAAGGGGAGAAAGAGTTTCAAACTGAGGTGCTTCTGCTTGGAAGACTGCATCACCGGAATCTTGTAAATTTGCTAGGATATTGTGTAGATAAAGGACAACGCATACTTGTTTATGAGTTCATGAGCAATGGAAGTTTAGAAAATCTTCTGTATGGTGAAGAACAGGATTTGAGTTGGGATGATAGGCTGCAAATTGCTATTGATATTTCACATGGAATTGAGTACCTTCATGAAGGAGCAGTTCCTCCAGTCATACATCGTGATTTGAAATCTGGCAATATATTGCTAGATCACGAAATGAGAGCTAAGGTTGCTGATTTTGGTCTCTCAAAGGAAGAGGTCTTTGATGGCAGGAATTCTGGCCTTAAAGGTACATATGGCTACATGGACCCAGCGTATATCTCCTCAAACAATCTCACAATGAAGAGTGACATCTATAGTTTTGGCATAATCATTTTTGAGCTCATCACTGCTATCCACCCACATCAAAATCTGATGGAATATATTAACCTTGCTGCAATGGATCATGATGGTGTAGACGAGATTCTTGACAAGAAACTTGTAGGAAAATGCAACCTTGAAGAAGTGAGGCAGCTGGCTAGAGTTGCTCACAAATGCTTGCATAAATCACCTAAGAAACGCCCTACTATAGGTGAGGTTTCTCAGGGTATATCGAGGATAAAACATCGGCGACtcatgaaagaaaatactatGCCATTTGCAGCGAGGAGTATTAGCAACTTATCTCGAGCATTGAGTAGAATAGAGGATCAACAGGTTGAATTGAGTAAGATAACAAGCATGAACCAGAGAGCAGCTGTGCCTGCATG 1220 0.4033 MFRETKEWWYKNRAHLSRCANERRSSLTTLPIRTNGLGTSTDFSASITSSITTSRTENQQKNSHFSWWNHQNKDQFASASGILKYSYKDIQKATQNFTTVLGHGSFGVVYKATMPTGDVVAAKVLASNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCVDKGQRILVYEFMSNGSLENLLYGEEQDLSWDDRLQIAIDISHGIEYLHEGAVPPVIHRDLKSGNILLDHEMRAKVADFGLSKEEVFDGRNSGLKGTYGYMDPAYISSNNLTMKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDHDGVDEILDKKLVGKCNLEEVRQLARVAHKCLHKSPKKRPTIGEVSQGISRIKHRRLMKENTMPFAARSISNLSRALSRIEDQQVELSKITSMNQRAAVPA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00410 406 SMART serkin_6 95 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g00410 406 ProSiteProfiles Protein kinase domain profile. 95 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g00410 406 ProSitePatterns Protein kinases ATP-binding region signature. 101 123 IPR017441 GO:0005524
Bva04g00410 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Bva04g00410 406 Pfam Protein kinase domain 99 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g00410 406 SUPERFAMILY Protein kinase-like (PK-like) 64 351 IPR011009 -
Bva04g00410 406 Gene3D Phosphorylase Kinase; domain 1 54 170 - -
Bva04g00410 406 CDD STKc_IRAK 101 357 - -
Bva04g00410 406 PANTHER OS01G0750732 PROTEIN 8 401 - -
Bva04g00410 406 Gene3D Transferase(Phosphotransferase) domain 1 171 377 - -
Bva04g00410 406 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 8 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00410 Bva-Chr4 2429513 2432659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00410 86 358 Receptor kinase-like Gene Family AT4G02010 41.438 4.71e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Bva04g00410 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00410 - - gmx:100794239 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01949 03 17521938 17524888 Bva04g00410 04 2429513 2432659 BWGD
Bva04g00410 04 2429513 2432659 Bva04g00410 04 2429513 2432659 ECH