Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00409 ATGGCTAGGTCTGCAAACGGCCAGCAAGAAGAATTGGAAGACGATGACGAAGAGAACCTCACTGGGAATGGTTCTTCTTCACACAAAGTGAAACTAGATGGAGCGAAAAGGGAGCAAGGGATCAATACGCATCGTTTAAAGCATTCAGAAACTGAGCAGCGTAGAAGGAGCAAGATCAACGAGAGATTTCAGACTCTGAGGGATCTCATACCTCAAAATGATCAAAGAAGAGACAAGGCTTCATTTTTGTTGGAGGTTATTGagtatattcaatttttacaagaaaagcTACAACTGTATGAGCAGTCTTACCAAGGGTGGAGTCAGGAGCCAACGAAATTAACTCCATGGAGAAATCACGGGCCTGCAAAAAATGTTACAGATCATCCTCAAGCTTTACAAAATGGTTCTAATCATGAGAACAATGATGTCgttttttcttcattgccTACAAATGCACAAAACCCAATAGAATCTGACTTGTTTACAACTACTGTTCAGAAGGCCTACCACCATGGTTCAGCAACTGAATCAATTCACTTGAGTATGCAAATGCATTCGGACTTGTTTGACCCAGTTGTGAGTGGTGGTTTGCCAAACCAACATTTGCACGAATCCCTATCTAATTCTGAGAACACGTCTTTTCATCCTCAACCTGAAGAGTGGCTTGACAGGCCAAATGAGGACAACTGCCTTGTTCGTGATAATTCATTGAAGGAACATGCAGAGCTTACAGTTGATAGTGGATCCATCAACATCTCAACTTCGTACTCTCAGGGAATATTAAATACTCTCACCCAAGCGCTGCAATCTTTGGGTGTGGATATGTCCCAAGCTAGCGTATCAGTGCAAATTGATGTTGGGAGACGAGCAAATACTGCCTCCACATCTAGCTCAAAGAGTCATGAAAACCAATTTGTAGACAACCAAGTGATGGCATGTTCAGGAGTTGATCACTGCAATGAAGAATCTGGACAATCTCTAAAGCGGCTTAGAACAGAAGCAAActa 1010 0.4079 MARSANGQQEELEDDDEENLTGNGSSSHKVKLDGAKREQGINTHRLKHSETEQRRRSKINERFQTLRDLIPQNDQRRDKASFLLEVIEYIQFLQEKLQLYEQSYQGWSQEPTKLTPWKAYHHGSATESIHLSMQMHSDLFDPVVSGGLPNQHLHESLSNSENTSFHPQPEEWLDRPNEDNCLVRDNSLKEHAELTVDSGSINISTSYSQGILNTLTQALQSLGVDMSQASVSVQIDVGRRANTASTSSSKSHENQFVDNQVMACSGVDHCNEESGQSLKRLRTEAN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00409 286 MobiDBLite consensus disorder prediction 150 177 - -
Bva04g00409 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
Bva04g00409 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 121 IPR036638 GO:0046983
Bva04g00409 286 SMART finulus 49 99 IPR011598 GO:0046983
Bva04g00409 286 MobiDBLite consensus disorder prediction 151 167 - -
Bva04g00409 286 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 125 IPR044295 GO:0003700|GO:0006351|GO:0046983
Bva04g00409 286 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 127 284 IPR044295 GO:0003700|GO:0006351|GO:0046983
Bva04g00409 286 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Bva04g00409 286 Gene3D - 42 115 IPR036638 GO:0046983
Bva04g00409 286 CDD bHLH_AtBIM_like 42 117 - -
Bva04g00409 286 MobiDBLite consensus disorder prediction 30 58 - -
Bva04g00409 286 MobiDBLite consensus disorder prediction 1 58 - -
Bva04g00409 286 PANTHER TRANSCRIPTION FACTOR BIM3 1 125 - -
Bva04g00409 286 PANTHER TRANSCRIPTION FACTOR BIM3 127 284 - -
Bva04g00409 286 Coils Coil 90 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00409 Bva-Chr4 2425749 2428842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00409 3 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 39.161 7.19e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g00409 HLH 3.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00409 - - gmx:100791730 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00409 04 2425749 2428842 Bva04g00409 04 2425749 2428842 ECH
Bva03g01957 03 17582357 17587366 Bva04g00409 04 2425749 2428842 ECH