Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00400 ATGGGTTCTGTTTGTTGTTGTTTAAATGTTGACGATTTTGAAGATTACGTAAATCCAAATAGTTCAGTATATAGGAACTGTGCGTGTCTCAGTTGCTTCATACAGAACTTTCTGAATGTGTATGCATCAATATTCCACAGAGGTGAAGTGCATGCCATTCCTTCATCTATACAGGGGGCAGCAGCTATGACTTCAACAGCTTCATTTGATAATTCTCTATCTGACATGTATCGCTCTCCCCCAAGACCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACCACGTGACGGACTAGTTTCCAGACGTGAGAAGGGTTCAAGTCATTCAAATGAAGAGTCAGAACCTCTAAGAAGTGCTGCAGATATGGACCCAGAATCTTTAAATTTGGGAGACAAATGGAACGATTGTACCTGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCTCTAAGACTCTCATCAGCAAAATATACAACTGGAGTTGGGGTTGTAGTTGCATCATCAGAAGAAGAGGATGCCTGCCCGACTTGTCTTGAAGAATATACTGAAGAAAATCCGAAGATATTGACAAAATGCTctcatcattttcatcttaGTTGCATTTATGAGTGGATGGAAAGAAGTGAAAACTGTCCTGTTTGTGGAAAGGTGATGGAATTCGATGAAACGACCTA 683 0.4026 MGSVCCCLNVDDFEDYVNPNSSVYRNCACLSCFIQNFLNVYASIFHRGEVHAIPSSIQGAAAMTSTASFDNSLSDMYRSPPRPLPYDADPRFFRSPRDGLVSRREKGSSHSNEESEPLRSAADMDPESLNLGDKWNDCTCEDGSKEYRSKSSLRLSSAKYTTGVGVVVASSEEEDACPTCLEEYTEENPKILTKCSHHFHLSCIYEWMERSENCPVCGKVMEFDETT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00400 227 MobiDBLite consensus disorder prediction 80 128 - -
Bva04g00400 227 SUPERFAMILY RING/U-box 172 223 - -
Bva04g00400 227 MobiDBLite consensus disorder prediction 91 121 - -
Bva04g00400 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 225 IPR013083 -
Bva04g00400 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Bva04g00400 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Bva04g00400 227 Pfam RING-H2 zinc finger domain 170 217 IPR024766 GO:0008270
Bva04g00400 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Bva04g00400 227 SMART ring_2 177 217 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00400 Bva-Chr4 2376982 2380938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00400 1 225 C3H Transcription Factor Family AT5G38895 59.292 7.03e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00400 - - gmx:100777068 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00400 04 2376982 2380938 Bva04g00400 04 2376982 2380938 ECH