Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00396 ATGGGGAGAGGAAGAGTGGAGTTGAAGAGAATAGAGAACAAGATAAACAGGCAGGTCACGTTTGCAAAGAGGAGAAATGGGCTACTCAAGAAAGCTTATGAGCTTTCAGTTCTCTGTGATGCTGAGGTTGCTCTCATCGTTTTCTCCACCCGTGGCAAGCTCTATGAGTTCTGTAGCAGCTCTAGCATGCTCAAAACAATTGAAAGGTACCAAAAATGCAGTTATGGTTCACTGGAAGTCAGCAAACCTGCAAAAGAGCTTGAGAGCAGCTACCGTGAGTACCTGAAGCTGAAAGCAAGATTTGAATCCCTTCAAAGGACCCAGAGGAACCTTCTTGGGGAAGACTTGGGCCCTTTAAATAGCAAAGAACTTGAGCAGCTTGAGAGGCAGCTGGATTCATCGCTCAAGCAAGTGAGGTCCACAAAGACTCAGTTCATGTTGGACCAGCTTTCTGATCTTCAAAACAAGGAGCAAGTGTTGATAGAAGCCAACAGAGCTTTGACCAGTAAGCTAGAAGAACTGAACTCAAGAACCCACTACAGGCAATCATGGGAAGATGGTGATCAAAGCATGCACTACGTACAGCAGAATGCTCAACCTCAGGCCTTCTTCCAGCCTTTGGACTGCAATCCAACATTGCAGATAGGTCCTGATTACAGGTACAATCCTGAAGCTTCAGATCAGATGCCTGCCACAACTCAAGCCCAGCAAGTGAATGGCTATATTCCTGGATGGATGCTTTA 743 0.4603 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCSSSSMLKTIERYQKCSYGSLEVSKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNSKELEQLERQLDSSLKQVRSTKTQFMLDQLSDLQNKEQVLIEANRALTSKLEELNSRTHYRQSWEDGDQSMHYVQQNAQPQAFFQPLDCNPTLQIGPDYRYNPEASDQMPATTQAQQVNGYIPGWML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00396 247 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 233 - -
Bva04g00396 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva04g00396 247 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bva04g00396 247 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Bva04g00396 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Bva04g00396 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bva04g00396 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva04g00396 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva04g00396 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva04g00396 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bva04g00396 247 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva04g00396 247 Coils Coil 124 144 - -
Bva04g00396 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bva04g00396 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bva04g00396 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00396 Bva-Chr4 2343001 2348341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00396 1 247 MADS-box Gene Family AT5G15800 73.282 4.91e-124 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bva04g00396 K-box 4.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00396 K09264 - gmx:100785322 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01969 03 17695025 17701056 Bva04g00396 04 2343001 2348341 BWGD
Bva04g00396 04 2343001 2348341 Bva06g01124 06 8943603 8949371 ECH
Bva04g00396 04 2343001 2348341 Bva04g00396 04 2343001 2348341 ECH
Bva03g01969 03 17695025 17701056 Bva04g00396 04 2343001 2348341 ECH
Bva01g01903 01 19336251 19342488 Bva04g00396 04 2343001 2348341 ECH
Bva11g00892 11 11200306 11205390 Bva04g00396 04 2343001 2348341 ECH