Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00394 ATGGGTTTGGGAGGCACACAGAAAGGATTGAGGAAAGGTCCTTGGACACATGAAGAGGATAGTTTGCTTTGTGAATATGTCACCTTGCATGGGGATTGCAGCTGGAGTTCTGTAGCAAGGTTTGCAGGCTTGAATAGGAGTGGCAAAAGTTGTAGGTTAAGATGGGTGAACTATTTGAAGCCTGGACTCAAGAAAGGCAAAATAACACCACAAGAAGAAAGCATCATTTTTGAACTGCATGCTGTGCTGGGTAACAAGTGGTCTACAATAGCTAAGTACTTGCCCGGAAGAACAgacaatgagataaaaaacTTCTGGAGAACAAATTTCAAGAACAAAGATCTAAAACCCTCTTCTAAGGAGTTTGAAAAGCGAAGAGCACAAGGCCTAAACCAGATCAAACGAGTGCAACAAGGGGAGAAGCAACTCCCCGAATGCAATGTGAAAACCAGAACTGAGAAAGAACAAACTGaagcacaagaaaagaagcagGAGATGGCTTTCATAAACCCATCAATAGAGGACCAAGAAATTACTTCTTTCTGGTCTGACATGATGGGATATGAAGGCATCTTGGTTAACCTTTGGAACCTTGATGAGCAACCACAGGGTCATCATGCAGATAATTTAAACCAGTTCAGCAATTATGCCATGCCAAACCAAGCTACGTTTGGAGGGGATACCAGTAAGCTAGCGGCACAGATTAATCAAGATAAAACTTTTGATCTTGATGAAGTTTTCAATAACCTTTGCTATGAAAAGTATGTGTTTGGCTG 776 0.3995 MGLGGTQKGLRKGPWTHEEDSLLCEYVTLHGDCSWSSVARFAGLNRSGKSCRLRWVNYLKPGLKKGKITPQEESIIFELHAVLGNKWSTIAKYLPGRTDNEIKNFWRTNFKNKDLKPSSKEFEKRRAQGLNQIKRVQQGEKQLPECNVKTRTEKEQTEAQEKKQEMAFINPSIEDQEITSFWSDMMGYEGILVNLWNLDEQPQGHHADNLNQFSNYAMPNQATFGGDTSKLAAQINQDKTFDLDEVFNNLCYEKYVFG 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00394 258 CDD SANT 69 110 IPR001005 -
Bva04g00394 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 114 IPR017930 -
Bva04g00394 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Bva04g00394 258 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Bva04g00394 258 Gene3D - 69 113 - -
Bva04g00394 258 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Bva04g00394 258 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Bva04g00394 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 202 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bva04g00394 258 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Bva04g00394 258 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Bva04g00394 258 CDD SANT 14 59 IPR001005 -
Bva04g00394 258 Gene3D - 9 65 - -
Bva04g00394 258 SMART sant 64 112 IPR001005 -
Bva04g00394 258 SMART sant 11 61 IPR001005 -
Bva04g00394 258 PANTHER MYB TRANSCRIPTION FACTOR 7 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00394 Bva-Chr4 2331473 2332619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00394 9 229 MYB Transcription Factor Family AT3G30210 44.715 2.28e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g00394 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00394 K09422 - gmx:100785540 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00394 04 2331473 2332619 Bva04g00394 04 2331473 2332619 ECH