Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00380 ATGGGTTTCCTTTTGACCCCCACAATTCAATCCTTCTCCATAGCAAGTTCTGGCATTTTGTTTCTGATTCTGCTTGCTTGTACTTTCTTCACTTCAACAGAAGCTTATGATGCACTTGACCCACATGGAAATATTACAATCAAATGGGATATAATGAGCTGGACACCAGATGGCTATGTGGCTGTTGTCACAATGCACAACTTCCAACAGTATCGCCATATTGCAGCACCGGGTTGGTCGATGGGATGGACATGGGCGAAGAAGGAGGTCATATGGAGCATGACGGGAGGACAAACCACAGAACAAGGAGATTGTTCAAAATTTAAGGGAAACATCCCTCATTGCTGTAAAAAGGACCCAACAGTTGTAGATTTAATGCCAGGAACGCCTTACAATCAGCAAGTCGCAAATTGCTGCAAAGGCGGAGTACTCAGCTCATGGGTGCAGGATCCAGTCAATTCAGTTGCCTCTTTTCAGGTAAGTGTTGGTAGAGGTGGAACCACTAACAAAACAGTCAAAGTGCCGAAGAACTTCACTCTGAAAGCACCGGGACCGGGTTATACTTGCGGGCGAGCAAAAATTGTAAGGCCAAGTCTATTCATCCAAGCAGACAAAAGGAGAACCACCCAAGCACTCATGACATGGAACGTGACATGCACATATTCGCAATTTCTAGCTCAGAAAACTCCCACATGCTGTGTCTCCCTCTCATCTTTCTACAATGATACTATTGTACCCTGTCCAACATGCGCGTGTGGATGCCAGACCAAATCATCTCAGCGTGGGAGCTGTGTAGAGGCGGATTCACCTCATATACAGTCAGTAGTTCCaacaaagaataattttgCACCTTTGGTTCAATGCACTCGTCACATGTGCCCTATCCGAATCCACTGGCATGTTAAACTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACCATAACTAACTTCAATTATAGGATGAACTATTCGGACTGGAACATGGTTGTTCAGCACCCGAATTTCGACAATCTCACCCAAAGTTTCAGCTTCAACTACAAGCCATTAACTCCTTATGGGGATATAAATGATACTGGAATGCTTTGGGGAGTCAAGTTCTACAACGATCTTCTTATGCAAGCTGGCCATGTTGGTAACGTGCAGTCGGAGCTACTCTTCCGAAAAGATACATCAACTTTTACATTTGACAAGGGTTGGGCTTTCCCACGAAGGATCTATTTCAATGGCGACAACTGTGTAATGCCGCCACCAGATGCTTATCCATGGTTGCCTAACACTGGTTCGCGAAAGACGGTTCCCCTTCTTGCTTTAATCATGGCTTTCTTGGTAACCTTGGTGTTTTATGCATATGCTTA 1358 0.4455 MGFLLTPTIQSFSIASSGILFLILLACTFFTSTEAYDALDPHGNITIKWDIMSWTPDGYVAVVTMHNFQQYRHIAAPGWSMGWTWAKKEVIWSMTGGQTTEQGDCSKFKGNIPHCCKKDPTVVDLMPGTPYNQQVANCCKGGVLSSWVQDPVNSVASFQVSVGRGGTTNKTVKVPKNFTLKAPGPGYTCGRAKIVRPSLFIQADKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCQTKSSQRGSCVEADSPHIQSVVPTKNNFAPLVQCTRHMCPIRIHWHVKLNYKEYWRVKVTITNFNYRMNYSDWNMVVQHPNFDNLTQSFSFNYKPLTPYGDINDTGMLWGVKFYNDLLMQAGHVGNVQSELLFRKDTSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNTGSRKTVPLLALIMAFLVTLVFYAYA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00380 452 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0031225
Bva04g00380 452 PANTHER PROTEIN COBRA 16 451 IPR006918 GO:0010215|GO:0031225
Bva04g00380 452 PIRSF COBRA 8 452 IPR006918 GO:0010215|GO:0031225
Bva04g00380 452 PANTHER COBRA-LIKE PROTEIN 16 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00380 Bva-Chr4 2238462 2242299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00380 1 450 COBRA Gene Family AT3G02210 72.406 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00380 - - gmx:100783820 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01990 03 17904892 17907489 Bva04g00380 04 2238462 2242299 BWGD
Bva04g00380 04 2238462 2242299 Bva03g01991 03 17907868 17911743 BWGD
Bva04g00380 04 2238462 2242299 Bva04g00380 04 2238462 2242299 ECH
Bva03g01991 03 17907868 17911743 Bva04g00380 04 2238462 2242299 ECH