Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00378 ATGGCTACACCCGGTGCACGAGCGCAGTCGTTCGGTCAGACCGAGATTAACTGGGACAAGCTAGACAAAACTAAGTTTTATGTTGTAGGGGCTGGAATCTTTACTGGCATCACAGTGGCACTCTACCCTGTTTCTGTTGTGAAAACTAGACTGCAGGTTGCTACAAAAGATACTGTTGAGAGAAATGCATTTTCTGTCATAAAAGGGTTACTTAGAACAGATGGTGTTCCTGGTCTTTACAAAGGATTTGGTACTGTCATTACTGGTGCAATTCCTGCCAGAATAATATTTCTCACTTTTCTAGAGACCACAAAAGTGTCTGCCTTCAGGCTCCTTGAACCATTTAGGTTATCTGAAACTACCCAGGCAGCCATAGCAAATGGAGTTGCAGGCATGGCATCATCGCTTTTTGCTCAAGCTGTTTTTGTCCCTATTGATGTGGTAAGTCAAAAATTGATGGTGCAAGGATATGCGGGTAATGTCAAATATAGTGGAGGCTTGGACGTTGCTCGTAAGGTTATAAGATCTGATGGCATTAGGGGATTGTATAAAGGGTTTGGTCTATCTATTATGACTTATTCACCATCTAGTGCTGTTTGGTGGGCAAGTTATGGTTCAAGCCAACGCTTCATTTGGAGATTCTTGCAAAATGGTAGcacaaatgaagaaataacTCCTAGTGTGCAGAAAATTATGTTAGTTCAGGCTTCTGGAGGAATTATTGCGGGTGCTACTGCATCCTGCATTACAACCCCATTGGATACCATCAAGACACGGCTGCAGGTGATGGGACATGAAAAGAGAAGCTCTATAAAACAAGTTGTTCAAGACTTGATTAAGGAGGATGGTTGGAAAGGTTTATACAGAGGGATGGGTCCAAGATTTTTCAGCATGTCAGCATGGGGAACATCAATGATTTTGGCTTATGAATATCTCAAGCGCTTGTGCGCAAAAGATGAATA 962 0.4179 MATPGARAQSFGQTEINWDKLDKTKFYVVGAGIFTGITVALYPVSVVKTRLQVATKDTVERNAFSVIKGLLRTDGVPGLYKGFGTVITGAIPARIIFLTFLETTKVSAFRLLEPFRLSETTQAAIANGVAGMASSLFAQAVFVPIDVVSQKLMVQGYAGNVKYSGGLDVARKVIRSDGIRGLYKGFGLSIMTYSPSSAVWWASYGSSQRFIWRFLQNGSTNEEITPSVQKIMLVQASGGIIAGATASCITTPLDTIKTRLQVMGHEKRSSIKQVVQDLIKEDGWKGLYRGMGPRFFSMSAWGTSMILAYEYLKRLCAKDE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00378 320 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Bva04g00378 320 PRINTS Mitochondrial carrier protein signature 39 53 IPR002067 GO:0055085
Bva04g00378 320 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Bva04g00378 320 Gene3D Mitochondrial carrier domain 27 320 IPR023395 -
Bva04g00378 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 23 107 IPR018108 -
Bva04g00378 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 210 IPR018108 -
Bva04g00378 320 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 315 IPR018108 -
Bva04g00378 320 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 13 320 - -
Bva04g00378 320 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 13 320 - -
Bva04g00378 320 Pfam Mitochondrial carrier protein 31 105 IPR018108 -
Bva04g00378 320 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
Bva04g00378 320 Pfam Mitochondrial carrier protein 235 319 IPR018108 -
Bva04g00378 320 SUPERFAMILY Mitochondrial carrier 19 312 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00378 Bva-Chr4 2223054 2228120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00378 16 320 Chloroplast and Mitochondria Gene Families AT5G15640 74.919 2.74e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00378 K15121 - gmx:100781796 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g01992 03 17916294 17920878 Bva04g00378 04 2223054 2228120 BWGD
Bva04g00378 04 2223054 2228120 Bva04g00378 04 2223054 2228120 ECH