Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00355 ATGCTCGAGCATATTCAAGGGGCTTCTCTGCACAAGTATCAAATAGTGGTAGATATTCTTACGAAAAATTTggcaaaagaagataaaattctGGTTGAGGAAACCAACAATGAGAGATGTAAGATGAACAAGAGTCCAAAAAAATCAGATTTTCCAGAAAAACAAGAGGTTAATGCCAACGCAAAAGCTTCATCTAGCTCAGCCCAATGGTTAAGATTGAAGGATCCAAGGATTGTCCGGGTATCTCGAGCATTTGGAGGTAAAGACAGGCATAGCAAAGTTTGCACCATAAGAGGATTGAGAGACAGAAGGGTGAGACTATCAGTGCCCACTGCCATTCAGTTATATGATCTTCAAGATAGGCTAGGGCTCAATCAGCCCAGCAAGGTTATTGATTGGTTGCTTAATGAAGCTAAGAATGAAATTGATGAACTCCCACCATTGCCAATGCTACCAGCTGGGAACTTTAGCCTAAGTCCATATCCTTCTGCTATTGCTTCCCATGCAGTTAGTGCCTCTCACCCTAACCAAGAAAGGTTCAATATCAATGGTACTACTTATTGGGAAGACCCAAGTGATAAAACTTCATGGAAATCAAAGTCTAAGGAAGTTTTAGGAGAAACGGttcccaagaaagaaaattggacAAGCAGAAGCAATGAAGAGAATAATAAACAAGGAAGCAATAATGAATCTCATGGTGCACAAGTTTTGCCAAATAATCTATTACAGAGAGCAAATCATCCTTCCTTGTTGGGCTTGCCTAATATAATGCCACTTGGTTACCAATGGGAGCATCCCGGGGATTCATCAGAGTCAAGAAATCATGGATTAACAAGCCAAACAGATTTATCAACTGGGACTTCTCAAATTTTGGTGTGTACTCCTGGAGTAACACAATCTTATTTCCCTTCAAATGTTACTGCAATAGATATGGATCCCAGAGAAATCAACCATTATCATCAAATGTTGAGCTCAAACTCACAAAACCTCTTGACAGATTCTCTTAGTCCATCTATATATCCAGTGAGCCAATCTGTGAAACCCTTCAGCTTGAGCATCATGCCTACCAAGCTTCTCCAATATTCTCCCAACAGTGAAAGCCAATACCATAAAGATGGGAATTTTCCATCCAAATG 1139 0.3881 MLEHIQGASLHKYQIVVDILTKNLAKEDKILVEETNNERCKMNKSPKKSDFPEKQEVNANAKASSSSAQWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVIDWLLNEAKNEIDELPPLPMLPAGNFSLSPYPSAIASHAVSASHPNQERFNINGTTYWEDPSDKTSWKSKSKEVLGETVPKKENWTSRSNEENNKQGSNNESHGAQVLPNNLLQRANHPSLLGLPNIMPLGYQWEHPGDSSESRNHGLTSQTDLSTGTSQILVCTPGVTQSYFPSNVTAIDMDPREINHYHQMLSSNSQNLLTDSLSPSIYPVSQSVKPFSLSIMPTKLLQYSPNSESQYHKDGNFPSK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00355 379 MobiDBLite consensus disorder prediction 193 219 - -
Bva04g00355 379 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 373 IPR005333 GO:0003700
Bva04g00355 379 MobiDBLite consensus disorder prediction 41 55 - -
Bva04g00355 379 Pfam TCP family transcription factor 87 222 IPR017887 -
Bva04g00355 379 MobiDBLite consensus disorder prediction 220 235 - -
Bva04g00355 379 ProSiteProfiles TCP domain profile. 87 145 IPR017887 -
Bva04g00355 379 MobiDBLite consensus disorder prediction 41 63 - -
Bva04g00355 379 MobiDBLite consensus disorder prediction 263 283 - -
Bva04g00355 379 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 42 373 - -
Bva04g00355 379 MobiDBLite consensus disorder prediction 183 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00355 Bva-Chr4 2108295 2110042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00355 70 323 TCP Transcription Factor Family AT3G02150 43.985 2.21e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva04g00355 TCP 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00355 - - var:108327895 358.607