Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva04g00341 | ATGATATCTTCGGGGATGAACTTGGTGATGACTGTCATTGGTTTCGTGCTGAGCATCATGTTTATCATTTTCGTTTGCACAAGACTCATTTGTGCTCGAATTCACTTGAATGCTTCCAGGAGATCCTTCTCTGTTATTGCTTCCAGATCCCATCTCAGTCTGCTCGAACGGTGTTTTCATGGTCTTGAGCCCGTAGCTGTAGCAAACTTTCCAACGAAGAAGTACAGTGACGAATTTTTTTCTGGGGCAGAGGATTATCAATGCACAGTCTGCCTTTCCGATTACCATGGTGAAGATATATTGCGTATCCTCCCCTATTGTGGACACTCCTTCCATATGACCTGCATAGACAAATGGCTGCACCAACATTCTACTTGTCCTGTTTGTCGAATATCATTGCGTGAATTCCCTGAGAGAAAGCGCTTTATGCAACCCTGGTTCAGCTCTGCAATTCGATCTCAGTATGGGATGGAATCCTTTGATGCCCACTCATATCACTGTATGGTGACTGATAATGGTTCGTCATCAAGAACACAGGACAACCATGGGGTTAACTCTGTAGAGGAGGGTCATTTTGCAGCTGAGTGTGGGGGAGTGGTTGCTCTGGAGAACTCCACAAACTA | 623 | 0.451 | MISSGMNLVMTVIGFVLSIMFIIFVCTRLICARIHLNASRRSFSVIASRSHLSLLERCFHGLEPVAVANFPTKKYSDEFFSGAEDYQCTVCLSDYHGEDILRILPYCGHSFHMTCIDKWLHQHSTCPVCRISLREFPERKRFMQPWFSSAIRSQYGMESFDAHSYHCMVTDNGSSSRTQDNHGVNSVEEGHFAAECGGVVALENSTN | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva04g00341 | 207 | ProSiteProfiles | Zinc finger RING-type profile. | 88 | 130 | IPR001841 | - | |
| Bva04g00341 | 207 | PANTHER | OS11G0150450 PROTEIN | 1 | 204 | - | - | |
| Bva04g00341 | 207 | SMART | ring_2 | 88 | 129 | IPR001841 | - | |
| Bva04g00341 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 138 | IPR013083 | - | |
| Bva04g00341 | 207 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 87 | 130 | - | - | |
| Bva04g00341 | 207 | PANTHER | OS11G0150450 PROTEIN | 1 | 204 | - | - | |
| Bva04g00341 | 207 | SUPERFAMILY | RING/U-box | 81 | 136 | - | - | |
| Bva04g00341 | 207 | Pfam | Ring finger domain | 87 | 130 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva04g00341 | Bva-Chr4 | 2037431 | 2040546 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva04g00341 | 13 | 207 | C3H Transcription Factor Family | AT4G10150 | 30.653 | 1.71e-20 | 84.3 |