Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00341 ATGATATCTTCGGGGATGAACTTGGTGATGACTGTCATTGGTTTCGTGCTGAGCATCATGTTTATCATTTTCGTTTGCACAAGACTCATTTGTGCTCGAATTCACTTGAATGCTTCCAGGAGATCCTTCTCTGTTATTGCTTCCAGATCCCATCTCAGTCTGCTCGAACGGTGTTTTCATGGTCTTGAGCCCGTAGCTGTAGCAAACTTTCCAACGAAGAAGTACAGTGACGAATTTTTTTCTGGGGCAGAGGATTATCAATGCACAGTCTGCCTTTCCGATTACCATGGTGAAGATATATTGCGTATCCTCCCCTATTGTGGACACTCCTTCCATATGACCTGCATAGACAAATGGCTGCACCAACATTCTACTTGTCCTGTTTGTCGAATATCATTGCGTGAATTCCCTGAGAGAAAGCGCTTTATGCAACCCTGGTTCAGCTCTGCAATTCGATCTCAGTATGGGATGGAATCCTTTGATGCCCACTCATATCACTGTATGGTGACTGATAATGGTTCGTCATCAAGAACACAGGACAACCATGGGGTTAACTCTGTAGAGGAGGGTCATTTTGCAGCTGAGTGTGGGGGAGTGGTTGCTCTGGAGAACTCCACAAACTA 623 0.451 MISSGMNLVMTVIGFVLSIMFIIFVCTRLICARIHLNASRRSFSVIASRSHLSLLERCFHGLEPVAVANFPTKKYSDEFFSGAEDYQCTVCLSDYHGEDILRILPYCGHSFHMTCIDKWLHQHSTCPVCRISLREFPERKRFMQPWFSSAIRSQYGMESFDAHSYHCMVTDNGSSSRTQDNHGVNSVEEGHFAAECGGVVALENSTN 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00341 207 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Bva04g00341 207 PANTHER OS11G0150450 PROTEIN 1 204 - -
Bva04g00341 207 SMART ring_2 88 129 IPR001841 -
Bva04g00341 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 138 IPR013083 -
Bva04g00341 207 CDD mRING-H2-C3H2C2D_ZSWM2 87 130 - -
Bva04g00341 207 PANTHER OS11G0150450 PROTEIN 1 204 - -
Bva04g00341 207 SUPERFAMILY RING/U-box 81 136 - -
Bva04g00341 207 Pfam Ring finger domain 87 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00341 Bva-Chr4 2037431 2040546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00341 13 207 C3H Transcription Factor Family AT4G10150 30.653 1.71e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00341 - - aprc:113873018 318.546