Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00339 ATGGCATTCCTCAATAAAGTTGGGAACCTACTCAAGCATTCTGCTGGCAAGTACATTAATCAAGAATTATCTGGATCTGGCCCATCAATTTACCAGGCAATCAGATCCATGTCATCTGCAAAACTTTTTGTTGGAGGTATTTCATTCAGCACAGATGATGCAAGTTTGAGAGAAGCCTTCTCTCGCTATGGGGAGGTGGTTGATGCTAGGGTTATTTTGGATCGTGAGAGTGGTAGGTCCAGAGGCTTTGGCTTCATAACTTATGCATCGACTGAGGATGCTTCTAGTGCCATTCAGGGGATGGATGGGCAGGATCTTCATGGTCGGAGGATACGAGTGAATTATGCAACAGAAAGGGCCCGTCCAGGGTTTGGTGGTGGCGGTGGCTATGATGGTAGTGGTGGTTATGGAGGTGGCAGTTACAGGGGTGGTGGCTATGGTGGTGGTGGTTATGGTGGTGGCAGCTATGGTGGGAGTAATTATGGGGGTGGGGATAACTATGGGAATGCAAGCTATGGTGGTGGGGGCAGCAACTTGAACTCCAATGCTAGTGCCAGCGGGGACTTCGGTGTTTCTGGTGGTGCTGGTAGTAGTAATTACCAATTCAACGAAACTTCGGGCGGATTTGCTAGCAGTGAATTCAATGGCGATTCTGGCTTGGGACGTGGAGATGATGGTCAGTTTGGTAGTGAGAAAAATGACGAAACAGGTTCATATGATGACGGTCAATTGGACCAAACACTTGATGACGATTCAAAGGAAAACAATGAACAACGTGATGGTTATGCTCACACCGGGAGATG 803 0.4782 MAFLNKVGNLLKHSAGKYINQELSGSGPSIYQAIRSMSSAKLFVGGISFSTDDASLREAFSRYGEVVDARVILDRESGRSRGFGFITYASTEDASSAIQGMDGQDLHGRRIRVNYATERARPGFGGGGGYDGSGGYGGGSYRGGGYGGGGYGGGSYGGSNYGGGDNYGNASYGGGGSNLNSNASASGDFGVSGGAGSSNYQFNETSGGFASSEFNGDSGLGRGDDGQFGSEKNDETGSYDDGQLDQTLDDDSKENNEQRDGYAHTGR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00339 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Bva04g00339 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Bva04g00339 267 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 252 - -
Bva04g00339 267 MobiDBLite consensus disorder prediction 207 267 - -
Bva04g00339 267 MobiDBLite consensus disorder prediction 246 267 - -
Bva04g00339 267 Gene3D - 16 136 IPR012677 -
Bva04g00339 267 SMART rrm1_1 41 114 IPR000504 GO:0003723
Bva04g00339 267 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 252 - -
Bva04g00339 267 SUPERFAMILY RNA-binding domain, RBD 29 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00339 Bva-Chr4 2025527 2028430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00339 42 119 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 5.99e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00339 K12741 - gmx:100818300 227.639