Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00312 ATGCTTATTGATGGTTATGATCTTGACATGTCATATGTCACTGACCAAATACTAGCAATGTCATTTCCTGCAGAACGCATGAGAGCAATGTATAGAAATCCTCTCTGGCAGGTCAAATCTGTGTTGGACATGAAACATCATGGGCATTATAAGatCTATAATCTCTgcatagaagaaaattatgatcCAGCACACTTTCATGATCGTGTGGAAGCATATCCTTTTGATGACAACCATGTGCCATCTCTTGAAATGATCAAAGCTTTTTGCAAAAGTGTGGATTCATGGCTATCAAGTGACCCAAAAAATATTGCAGTTATACATTGCATGGCAGGGAAGGGTAGAACTGGCTTAATGGTATGTTCATACCTAGTTTACTGCGGTATGTCAGCAGAGGAGGCTCTTCAATTGTATGCAGAGAGACGGACAACCAATAATGAAGGGGTATCAATACCAAGCCAACGTCGTTATGTGGGGTATTGGGAAAGCGTGCTTTCTTTCAGTAGGTGCATTGGTATCGGACCACCAGATGTTAACTTGCCTCAAACATGTAGCCGAGAATTGCGGCGAATCCGGCTTTATGATACAGTTAATATTGACAGAATATTCTTCGTGGTCTCAGAGCTGCACAAGGTTCCTGGTCAGGTTTACCAACCTTCAGTTGAAGTTTCCAGGAACTGCTGCAGACAGATTAAGAAAGGGTATCAGAGAACTACCAGCCCTCGCTATTATATCTCTTTCATTGAAGGTGATGAAGATGGAGagaaattagaattagaagagCCTCATATTGTGGTACAAATGGACACGGAGCGTCCTGTTCTCTACCAAAAATCCTGTCTAGACCATTATTTTGACAAACCTATACAAATCATTGGACAGGTCACTGGAGATGTGCGTGTCATATTCTACGAGAAAATGAGAGGAGGGCGTCTTTTCTATTGCTGTTTCAATACTGCTTTTATTAGGAACGGCCTACTACAGCTCACCGTGAGGGAGTTGGATAAAGTTGGGAAAAAAGGAAGATCAATATGTGGCCCTGCCTTCTGCTTAGAATTGCTGTTTGGCCCTGCCAACAATACAAGACATTCATTTACATCTCCATCCAATGCCTTAACAGCAGCTACTGTAGCTGCATTGGCTGCTCTATTAGCTCCTGCTACTGCTCGGTTTACCCTTTCATCTACCTTAGCCACATTTTCATATTCTCTAAAAAGGGGCAATCTTTGTCTTCAGGCTTTTGCCACTTCCACTAGCTTAGTggcaataaagaaaaggattgATGAGAGTCGAAACTTGACCCTTGATGGTATAACACATTCTTTGATTCGTCAAGAGGATAGCATTATATTTAGCCTTTTGGAGCGAGCTCAATATTGTTA 1382 0.403 MLIDGYDLDMSYVTDQILAMSFPAERMRAMYRNPLWQVKSVLDMKHHGHYKIYNLCIEENYDPAHFHDRVEAYPFDDNHVPSLEMIKAFCKSVDSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLVYCGMSAEEALQLYAERRTTNNEGVSIPSQRRYVGYWESVLSFSRCIGIGPPDVNLPQTCSRELRRIRLYDTVNIDRIFFVVSELHKVPGQVYQPSVEVSRNCCRQIKKGYQRTTSPRYYISFIEGDEDGEKLELEEPHIVVQMDTERPVLYQKSCLDHYFDKPIQIIGQVTGDVRVIFYEKMRGGRLFYCCFNTAFIRNGLLQLTVRELDKVGKKGRSICGPAFCLELLFGPANNTRHSFTSPSNALTAATVAALAALLAPATARFTLSSTLATFSYSLKRGNLCLQAFATSTSLVAIKKRIDESRNLTLDGITHSLIRQEDSIIFSLLERAQYC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00312 460 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 3 361 - -
Bva04g00312 460 ProSiteProfiles C2 tensin-type domain profile. 199 358 IPR014020 -
Bva04g00312 460 PANTHER BNAC03G16750D PROTEIN 3 361 - -
Bva04g00312 460 Gene3D Protein tyrosine phosphatase superfamily 3 172 IPR029021 -
Bva04g00312 460 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 87 142 IPR000387 GO:0016311|GO:0016791
Bva04g00312 460 Gene3D Chorismate mutase, AroQ class superfamily, eukaryotic 426 460 IPR037039 GO:0004106|GO:0009073
Bva04g00312 460 ProSiteProfiles Phosphatase tensin-type domain profile. 1 168 IPR029023 -
Bva04g00312 460 Pfam C2 domain of PTEN tumour-suppressor protein 294 355 IPR014020 -
Bva04g00312 460 SUPERFAMILY Chorismate mutase II 426 459 IPR036263 GO:0046417
Bva04g00312 460 CDD PTP_PTEN 9 162 IPR045101 GO:0016791
Bva04g00312 460 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 3 165 IPR029021 -
Bva04g00312 460 SMART PTEN_C2_2 181 357 IPR014020 -
Bva04g00312 460 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 260 357 IPR035892 -
Bva04g00312 460 Pfam Tyrosine phosphatase family 87 143 IPR026893 GO:0004721
Bva04g00312 460 Gene3D - 252 361 - -
Bva04g00312 460 ProSitePatterns Tyrosine specific protein phosphatases active site. 107 117 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00312 Bva-Chr4 1884301 1892961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00312 1 367 Protein tyrosine phosphatase (PTP) family AT5G39400 68.564 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00312 K01110 - jre:108987413 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00312 04 1884301 1892961 Bva04g00312 04 1884301 1892961 ECH