Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00308 ATGGGTTGCATTAACTCGAAGAATGCCGTTTCCAAAGCTTCACCGCCATATTTGCCCTCGGCGAGGATCACCGATCATGGGTCTGTGATTGCGGAGCCTGCATCCAGAACCCAATCTGTAGTTCATTATGACAACAAAGGGGACGTGAACTCGGAGGATCGGAGCCGTGATGGGAAGAGGTCCACGTCTAAGAAGGAAAGCTCCAAAAGCAGTACTAATGGGTCTCTCAGTTTCAGGCTCGGCCTCTCGCATAGGTTTGTGGAAGCTGAGCAGAATGCAGCTGGATGGCCCCCTTGGCTCACCGCTTCTGCTGGGGAAGCTATTCATGGATGGATACCCCTCAAGGCAGATTGTTATGAGAAATTAGACAAGATTGGACAAGGTACATATAGCAGTGTTTACCAAGCACGAGAAGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAAGTGCGCTTTGACAATTTTCAACCAGAGAGCATCAGGTTCATGGCCAGAGAAATAGCAATTCTCCGCATGCTTGACCACCCGAACATCATGAAACTTGAGGGTCTAATCACTTCTCGAATATCAAGTAGCTTATACCTTGTATTTGAATACATGGAGCATGATCTTGCAGGCCTGGTTTCTTGTCCTGATGCCAAGTTCACTGAGTCACAGGTTAAATGTTACATGAGGCAGCTGTTAAGTGGAATTGAGCACTGTCACGTCCGTGGTGTTATGCATCGAGACATTAAAGCATCCAATATATTAGTGAATAATGAAGGTACCCTCAAGATAGGAGATTTTGGATTAGCAAATATCGTCAGCCCAGCCAACCGGCAGCAATTAACCAGTCGTGTAGTGACTCTATGGTATCGACCTCCTGAACTCTTGATGGGATCAATGAGTTATGATGTATCAGTGGATCTGTGGAGTGTAGGCTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTCTCCTTAAGGGGAGAACTGAGGTCGAACAAttgcacaaaatttttaagctTTGTGGTTCTCCACCTGATGAGTTCTGGAAAAAGTCTAAGCTTCCTCATGTGAGTATGTTTAAACCTCAAACTCATTATACAAGTTGTCTTCGGGAGAGGTGTAAAGAATTTCCAGACACTGCTGTAAACCTAATTGAGACTTTGCTGGCCATTGACTCTTCCAAACGGGGGACTGCCTCCTCTGCCTTAATGACTGAGTATTTTAGAACCAAACCATATGCTTGTGATCCATCAACCCTACCAAAGTATCCACCTAACAAAGAAATGGATGCTAAACATCGGGAAGAAGCACGCAGGAAAAAGACTGGAGGTAAATTATATGATCCTACAATGTCAAGAAGGCAAAGACGAGGCTGTAAAATTTTGCAAGAACCAAACAATGGCACTAAACCACCTACGGAAGAGGAAGGAGATAACAATTCTCAAACTACACATAAAGATGATGGTAAAGTAAATCCTGGCAAGGGGAAAGGAGGAGCCATGAACAGAGGGCAAATGAAGCCAACATCAGATGCTGCAACATGGGAGCCTTGTACAGCGAATATGCCTAATGGGTATAGTGTATTGACCGGACCAGTAGCAGTATCAGGATCTAGTGGGTTTGCATGggcaaaacgaagaaaaccagATACTTCATCCACATTATCAGATGGCTCACGAAGCAAAATCAGTGCACTGGATCCATCTTTTGCAAAAGGCACATACGATTTAACAAACCTACATGtttcagaaagaaaatatagcgATGACCCCGCAGATATTACCATGGATTATGACCCCACAGAACAATACACTCAGGGCGTGAATAAGCAAGCTGAGCATGTTGAATTATCCGGACGAATGCTCTCCCGACAAAATAAAGTTGATGACTTGTTGCTCAAGAATGAAAACAGCATTCGTCGAGCAGCTCGCAAATCAAGGCTTGGAAGAGACTA 1940 0.4345 MGCINSKNAVSKASPPYLPSARITDHGSVIAEPASRTQSVVHYDNKGDVNSEDRSRDGKRSTSKKESSKSSTNGSLSFRLGLSHRFVEAEQNAAGWPPWLTASAGEAIHGWIPLKADCYEKLDKIGQGTYSSVYQAREVETGRMVALKKVRFDNFQPESIRFMAREIAILRMLDHPNIMKLEGLITSRISSSLYLVFEYMEHDLAGLVSCPDAKFTESQVKCYMRQLLSGIEHCHVRGVMHRDIKASNILVNNEGTLKIGDFGLANIVSPANRQQLTSRVVTLWYRPPELLMGSMSYDVSVDLWSVGCVFAELFLGKPLLKGRTEVEQLHKIFKLCGSPPDEFWKKSKLPHVSMFKPQTHYTSCLRERCKEFPDTAVNLIETLLAIDSSKRGTASSALMTEYFRTKPYACDPSTLPKYPPNKEMDAKHREEARRKKTGGKLYDPTMSRRQRRGCKILQEPNNGTKPPTEEEGDNNSQTTHKDDGKVNPGKGKGGAMNRGQMKPTSDAATWEPCTANMPNGYSVLTGPVAVSGSSGFAWAKRRKPDTSSTLSDGSRSKISALDPSFAKGTYDLTNLHVSERKYSDDPADITMDYDPTEQYTQGVNKQAEHVELSGRMLSRQNKVDDLLLKNENSIRRAARKSRLGRD 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00308 646 PANTHER CYCLIN-DEPENDENT KINASE 58 596 - -
Bva04g00308 646 MobiDBLite consensus disorder prediction 474 488 - -
Bva04g00308 646 MobiDBLite consensus disorder prediction 413 510 - -
Bva04g00308 646 Gene3D Phosphorylase Kinase; domain 1 106 201 - -
Bva04g00308 646 MobiDBLite consensus disorder prediction 1 75 - -
Bva04g00308 646 SUPERFAMILY Protein kinase-like (PK-like) 113 409 IPR011009 -
Bva04g00308 646 Gene3D Transferase(Phosphotransferase) domain 1 202 442 - -
Bva04g00308 646 PANTHER CELL DIVISION PROTEIN KINASE 58 596 - -
Bva04g00308 646 MobiDBLite consensus disorder prediction 421 455 - -
Bva04g00308 646 MobiDBLite consensus disorder prediction 31 45 - -
Bva04g00308 646 Pfam Protein kinase domain 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g00308 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Bva04g00308 646 ProSiteProfiles Protein kinase domain profile. 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g00308 646 CDD STKc_CDK9_like 119 403 - -
Bva04g00308 646 MobiDBLite consensus disorder prediction 46 66 - -
Bva04g00308 646 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Bva04g00308 646 SMART serkin_6 119 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00308 Bva-Chr4 1872104 1877422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00308 111 435 Core Cell Cycle Gene Families AT5G10270 46.176 7.01e-107 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Bva04g00308 Pkinase 5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00308 - - lja:Lj1g3v2982400.1 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00308 04 1872104 1877422 Bva04g00308 04 1872104 1877422 ECH
Bva03g02104 03 18544608 18550252 Bva04g00308 04 1872104 1877422 ECH