Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00303 atggcaaggaagaggaagagtgCTGAAGCAgtggaagaagagagaaagcaaGGTGATGGGGCCATGGCATGGGATGAGATGATGAAAGAAGCAGAATTAGCAGCACTGCGAGGGAGACGAGCCAGGAAGCGCTTTGTTGGAGTGAGGCAAAGGCCATCGGGGAGATGGGTGGCTGAGATCAAGGACACAATCCAGAAGATTAGAGTGTGGTTAGGCACTTTTGATACAGCTGAGGAAGCAGCAAGAGCCTATGATGAAGCTGCTTGCTTGCTTCGCGGCGCTAACACAAGGACAAACTTCTGGCCTTGTTCTCAACCATCTTCAACTCCAGCTCTTCCCTCAAAGATCACTAATCTCCTCCTTCAAAGGCTCAAAGCAAGGAACAACAACTCTACTTGCTCTTCTGATTCCTCCAATGCTCTTCTCATCAACCAGCAGCAGCAAAAGCAGCAAGAAGATGGAGATGCTTATGCATATGGGCAAGTGTCAACTGATTTCTCAGTTGATCAGTTTGCTGATTTTCTTAATGACCCAGAAGATTACAGCACAAGTAACAGTGATTTCATCAGCAGCAGTGCACAAATTGATTACATAACAAGCAGTTTTGAATCATGTTTGACTGAAAAAGATGACTGCAGGGAAATGGGTTTGGAGTATAATTACAGTAATTTGACAGAAACTTCAAGTCCTGACTGCAATTCAGGAGGGGAAAGATCAGAGGACAGTGAAGAAGAAGGCACTGATCTGAGTGTCTTGGATTTTCAGTTTCTGGACAATGTTGCTCCATCATCTTACTATTCTCCTTTTGAGATAGCAGATGAGATTGAGGAGCCTGTAGAGCCAGAGAACTATGTTGATGAGCCTTCAATGCTCAGAGCTGCCATGAAGAGGATGAAATATGAGAGGAAATTCTCAGCTTCTCTCTATGCCTTCAATGGGATAACTGAGTGCTTAAAGTTGAAATTGGGATCAGGAAAATCAAGTGGAAGAGCAATTTCTGATCAGCTAACCAACCTCAAGATGGCATGtaacaagaacaaaattgaGGAGAATATGGAAGGGAATCCACAAACACCATCTCACAtggattcttcttcttcttcttcatcatcatcatcatcaattaGTGTTGATGGAGAACTGTTACTTTGGAATTCACTGGATCTTCCTCCCATCTGTTTTGTTAACTA 1190 0.4025 MARKRKSAEAVEEERKQGDGAMAWDEMMKEAELAALRGRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQPSSTPALPSKITNLLLQRLKARNNNSTCSSDSSNALLINQQQQKQQEDGDAYAYGQVSTDFSVDQFADFLNDPEDYSTSNSDFISSSAQIDYITSSFESCLTEKDDCREMGLEYNYSNLTETSSPDCNSGGERSEDSEEEGTDLSVLDFQFLDNVAPSSYYSPFEIADEIEEPVEPENYVDEPSMLRAAMKRMKYERKFSASLYAFNGITECLKLKLGSGKSSGRAISDQLTNLKMACNKNKIEENMEGNPQTPSHMDSSSSSSSSSSSISVDGELLLWNSLDLPPICFVN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00303 396 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 3 340 - -
Bva04g00303 396 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Bva04g00303 396 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 340 - -
Bva04g00303 396 MobiDBLite consensus disorder prediction 350 373 - -
Bva04g00303 396 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Bva04g00303 396 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Bva04g00303 396 CDD AP2 43 100 IPR001471 GO:0003700|GO:0006355
Bva04g00303 396 MobiDBLite consensus disorder prediction 223 247 - -
Bva04g00303 396 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Bva04g00303 396 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Bva04g00303 396 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Bva04g00303 396 MobiDBLite consensus disorder prediction 1 23 - -
Bva04g00303 396 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00303 Bva-Chr4 1844514 1845704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00303 42 120 AP2-EREBP Transcription Factor Family AT5G19790 72.152 9.78e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g00303 AP2 7.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00303 K09286 - gmx:100786711 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00303 04 1844514 1845704 Bva04g00303 04 1844514 1845704 ECH