Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00300 ATGGCAGCTCGTATAATCACGGTATCACAGGACGGAAATGGAGACTACCGAACGGTGCAAGAAGCAATCGATGCTGTTCCACTGGGAAACACTCGTCGAACGGTGATTCGAGTGACTCCAGGCATCTACAAACAACCAGTCTACGTGCCCAAGACCAAAAATTTCATCACTCTCGCGGGTCTGCGTCGAGAGGATACGGTGCTTACTTGGAATAACACCGCTGCCAAAATCGAGCACCATCAGGCTGCTAGGTTGATCGGGACTGGTACCTTTGGTTGTGGGAGCACCATTGTGGAAGGAGAGGACTTTATTGCTGAGAATATTACGTTTGAGAATTCATCCTCTGAGGGTTCAGGGCAAGCAGTGGCAATTAGAGTGACAGCAGATCGATGTGCCTTCTATAACTGTAGGTTCCTTGGATGGCAGGACACACTGTACTTACATTATGGCAAACAGTATCTAAAAGATTGCTATATTGAAGGAAGTGTGGACTTCATTTTCGGCAATAGCACTGCTCTTTTGGAGCATTGTCATATCCACTGCAAATCTCAGGGATTTATAACTGCACAGAGCAGAAAATCTTCACAAGAATCAACTGGTTATGTATTCTTAAGATGCGTTATCACAGGAAATGGAGGAAGTTCATACATGTATCTTGGTCGACCCTGGGGACCTTTTGGAAGAGTGGTGTTTGCTTACTGTTACTTGGATCAATGCGTAAAGCATGTTGGCTGGCATAACTGGGGAAAAGTTGAGAATGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCGGGTTCTTCTCCGATGAAACGAGTAGCATGGGCTAGAGAATTGGTGGATGAAGAAGCAGAGCAGTTCCTCATGCACAATTTCATTGACCCGGAACCAAGTAGACCTTGGCTTGCGCAAGGAATGGCTTTGAGGATACCATTTTCTGCATA 950 0.4558 MAARIITVSQDGNGDYRTVQEAIDAVPLGNTRRTVIRVTPGIYKQPVYVPKTKNFITLAGLRREDTVLTWNNTAAKIEHHQAARLIGTGTFGCGSTIVEGEDFIAENITFENSSSEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKSSQESTGYVFLRCVITGNGGSSYMYLGRPWGPFGRVVFAYCYLDQCVKHVGWHNWGKVENERSACFYEYRCFGPGSSPMKRVAWARELVDEEAEQFLMHNFIDPEPSRPWLAQGMALRIPFSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00300 316 SUPERFAMILY Pectin lyase-like 2 303 IPR011050 -
Bva04g00300 316 Gene3D - 2 309 IPR012334 -
Bva04g00300 316 PANTHER PECTINESTERASE 1 315 - -
Bva04g00300 316 Pfam Pectinesterase 6 296 IPR000070 GO:0030599|GO:0042545
Bva04g00300 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
Bva04g00300 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00300 Bva-Chr4 1831076 1833917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00300 4 305 Carbohydrate Esterase AT5G47500 37.621 1.14e-70 221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00300 04 1831076 1833917 Bva04g00300 04 1831076 1833917 ECH