Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00294 ATGGAAAACATTGCTTCAAGACCcagaaagaaagatgaaaacttTGAATTGCCTCCGGGATTTCGATTCCATCCAACGGATGAAGAGCTTATAACCCAGTACCTCTCCCACAAAGTTCTTGATAGCCACTTCTGCGCCAGAGCGATTGGCGAGGTTGATATGAACAAGTATGAGCCATGGGATTTACCTTGGAGAGCCAAAATGGGTGAAAAAGAATggtattttttctctttaagaGACAGAAAATACCCAACTGGTTTAAGAACAAACAGAGCCACTGATGCTGGGTACTGGAAAGCTACAGGCAAAGACAGAGAGATATTCAAAGCAAAATCACTGATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGCAGAGCTCCAAAAGGCCAAAAAACCAACTGGGTCATGCATGAATATAGACTAGAGGGCAAACTCTGTGCTTACAATCTACCCAAAACTGCTAGGAACGAGTGGTGTATCTGCAGAGTCTTTCAGAAAAGTTCCGGTGGACAGAAAATCCATCTTCCGGGGTTGGCAAGGTTGAGCTCCTTCGGAAATGaatctccttcttcttcttcgttcTTGCCGCCGTTAATGGATTCTTCTCCGTACAACAGTGAAACAAAAACCACTGTCGGCGAGTTATCACACGTGACCTGCTTCTCCGACCCGAGCCCTACGGCGCTGGCATCGGAGGATCAAAAGACACAAGATGACGTGGCTGATAGCTTGGAAAAGGAAACTCATATCTTGGCTTCTTCAGGCGCTTATTCAAATCCCTCTGATATTTCCATTTCCCCTGCCTCGTGGAGTTTTCCCAAATTAACCCCCCAAGGTTCCTATCAGTGTTCTCAGATGGAGGCCCAAATTGGGAATTCACAGTTCCCAGATTGTTTTCTAGTTCAAGATCCGTCCATGATGAGGATGTTGATTGAAAACGGTGGATCCAACACGAAGCAGAATCTGAAAACAGAGTTTTCTCAGGACACGGACTTGGATGCTGATATCTCCTCTGTCATATACGACGATGGAATGAATCAAAGATCATTTGACAACCAAGCATATGCCTCAGCTTCTGCTTGGCCTGTAGACAATGGCAGCCTCTGGAATTACTA 1118 0.4302 MENIASRPRKKDENFELPPGFRFHPTDEELITQYLSHKVLDSHFCARAIGEVDMNKYEPWDLPWRAKMGEKEWYFFSLRDRKYPTGLRTNRATDAGYWKATGKDREIFKAKSLIGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKLCAYNLPKTARNEWCICRVFQKSSGGQKIHLPGLARLSSFGNESPSSSSFLPPLMDSSPYNSETKTTVGELSHVTCFSDPSPTALASEDQKTQDDVADSLEKETHILASSGAYSNPSDISISPASWSFPKLTPQGSYQCSQMEAQIGNSQFPDCFLVQDPSMMRMLIENGGSNTKQNLKTEFSQDTDLDADISSVIYDDGMNQRSFDNQAYASASAWPVDNGSLWNY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00294 372 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Bva04g00294 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 332 - -
Bva04g00294 372 PANTHER NAC DOMAIN-CONTAINING PROTEIN 92-LIKE 10 332 - -
Bva04g00294 372 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Bva04g00294 372 Gene3D NAC domain 26 170 IPR036093 GO:0003677|GO:0006355
Bva04g00294 372 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00294 Bva-Chr4 1788258 1789812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00294 15 372 NAC Transcription Factor Family AT5G07680 54.039 1.28e-121 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva04g00294 NAM 2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00294 - - vvi:100250998 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00294 04 1788258 1789812 Bva04g00294 04 1788258 1789812 ECH
Bva03g02124 03 18721404 18723056 Bva04g00294 04 1788258 1789812 ECH